CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.225e-22
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            F YA+  G ++V+A+HKAN+++KTDG+F     +VA +YP++   +  +D   M L+  P  F  +V  NL+GDI+SD  AGLIGGLGL PS NIGE
Sbjct:  151 FQYAQKEGMQKVTAVHKANVLKKTDGIFRDEFYKVASEYPQMEATDYYVDATAMYLITQPQEFQTIVTTNLFGDILSDEAAGLIGGLGLAPSANIGE 247          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: AKSF_METJA (Homoisocitrate dehydrogenase OS=Methanocaldococcus jannaschii GN=aksF PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.745e-21
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            ++   F YA  + R++VS IHKAN+++ TDGLFL+   E+ + Y  I  ++ ++D+  M L+K+P  FDV+V  N++GDI+SD  + LIGGLGL PS NIG+
Sbjct:  160 IIRFAFEYAIKNNRKKVSCIHKANVLRITDGLFLEVFNEIKKHY-NIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIGD 260          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.116e-21
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIG 335
            ++   F YA+  GR RV  +HK+ I +  DGLF+   +E++++YP++T E  +IDN  + +V NP+A+   V V PNLYGDI+SDL +GL  G LGLTPS NIG
Sbjct:  183 VIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIG 286          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F +A  +GR+ V+ IHKANIM+  DGLF +   +VA  Y  IT +++++DN  M  V  P  FDVLVMPNLYG I+S++ + L+GG G+ P  N G
Sbjct:  175 FDFALQNGRKSVTCIHKANIMKLADGLFRRTFYDVANGYDAITPKDLIVDNASMQAVSRPQQFDVLVMPNLYGSILSNIGSALVGGPGVIPGANFG 270          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            +++   F  A+  GR++V    K+NIM+  +G   +   +VA++YP+I    +++DN    LVK P  F+V+V  N+ GDI+SDL +GLIGGLG  PS NIG   +A+ EA
Sbjct:  169 KIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIG-NEVAIFEA 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LYS12_YEAST (Homoisocitrate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LYS12 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.831e-20
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   36 LNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            L++     +T G+  ++  HK+N++ ++DGLF + C+EV E    KY +I Y E ++D+    L + P  FDV+V PNLYGDI+SD  A L+G LG+ PS N+G
Sbjct:  186 LDIALKRLQTRGQATLTVTHKSNVLSQSDGLFREICKEVYESNKDKYGQIKYNEQIVDSMVYRLFREPQCFDVIVAPNLYGDILSDGAAALVGSLGVVPSANVG 289          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_METJA (3-isopropylmalate/3-methylmalate dehydrogenase OS=Methanocaldococcus jannaschii GN=leuB PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3
Query:   60 KTHGRE-RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            K  G+E +V+  HKAN+++ TDGLF K   +VAE+Y +I  E+  ID   M ++  P  FDV+V  NL+GDI+SD  AG +GGLGL PS NIG+
Sbjct:  157 KKMGKEGKVTCAHKANVLKLTDGLFKKIFYKVAEEYDDIKAEDYYIDAMNMYIITKPQVFDVVVTSNLFGDILSDGAAGTVGGLGLAPSANIGD 250          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH1_KLULA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Kluyveromyces lactis GN=IDH1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F +A  + R+ V A+HKANIM+  DGLF     E+ A +YPE+  + +++DN  M  V  P  FDVLV PNLYG I+ ++ + LIGG GL P  N G
Sbjct:  179 FDFALKNNRKSVCAVHKANIMKLGDGLFRNTVNEIGANEYPELDVKNIIVDNASMQAVAKPHQFDVLVTPNLYGSILGNIGSALIGGPGLVPGANFG 275          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            ++N+  +YA    R +V+ +HKAN+M+ TDGLF   CRE+ +   ++ +EE+ +D     LV++P  FDV+V  N+YGDI+SD  + + G LGL PS NIG+
Sbjct:  150 IVNVALNYALMR-RRKVTCVHKANVMRVTDGLFASVCREILKG--KVNFEEMYVDAAAANLVRDPTRFDVIVTSNVYGDILSDEASQIAGSLGLAPSANIGD 248          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_RICBR (Isocitrate dehydrogenase [NADP] OS=Rickettsia bellii (strain RML369-C) GN=icd PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            +++   F YA  + R++V+ + K NIM+ +DG+F K   E+A++YP+I  E  +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIGE
Sbjct:  153 KIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGIFHKVFNEIAKEYPQINNEHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGE 255          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_METTH7.225e-2248.453-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
AKSF_METJA2.745e-2146.08Homoisocitrate dehydrogenase OS=Methanocaldococcus... [more]
IDH2_YEAST6.116e-2148.08Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH1_SCHPO1.779e-2047.92Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH_THET86.762e-2041.44Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
LYS12_YEAST8.831e-2042.31Homoisocitrate dehydrogenase, mitochondrial OS=Sac... [more]
LEU3_METJA3.356e-1950.003-isopropylmalate/3-methylmalate dehydrogenase OS=... [more]
IDH1_KLULA4.383e-1946.39Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LEU3_SULSO5.724e-1943.143-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
IDH_RICBR1.275e-1843.69Isocitrate dehydrogenase [NADP] OS=Rickettsia bell... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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