CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F +AK + R+ V+A+HKANIM+  DGLF     E+ +K YP+I    +++DN  M  V  P  FDVLV P++YG I+ ++ A LIGG GL    N G
Sbjct:  178 FDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFG 274          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LYS12_SCHPO (Probable homoisocitrate dehydrogenase OS=Schizosaccharomyces pombe GN=lys12 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   66 HGRERVSAIHKANIMQKTDGLFLKCCREVAE---KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            H +  V+ IHK+N+M  TDGLF + CR        Y  I  +E ++D+    L + P  FDV+V PNLYGDI+SD  A LIG LGL PS N+G+
Sbjct:  186 HKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGD 279          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIG 335
            ++   F YA+   R +V  +HK+ I +  DGLF+   ++++ +YP+I  +  ++DN  +  V++P A+D  V+V PNLYGDI+SDL +GL  G LGLTPS NIG
Sbjct:  182 VIRYAFEYARAVDRSKVLVVHKSTIQRLADGLFVDVAKKLSSEYPDIELQTELLDNTVLKTVQHPEAYDDVVVVCPNLYGDILSDLNSGLSAGSLGLTPSANIG 285          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_RICFE (Isocitrate dehydrogenase [NADP] OS=Rickettsia felis GN=icd PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            +++   F YA  + R++V+ + K NIM+ +DG+F K   E+A++YP+I  E  +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIG+
Sbjct:  153 KIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGVFHKIFNEIAKEYPQINNEHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ 255          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SULTO (3-isopropylmalate dehydrogenase OS=Sulfolobus tokodaii GN=leuB PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            R++V+ +HKAN+M+ TDGLF + CR V +   ++ Y E+ +D     LV+NP  FDV+V  N+YGDI+SD  + + G LG+ PS NIG+
Sbjct:  162 RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGD 248          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_LACLA (3-isopropylmalate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=leuB PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.266e-18
Identity = 42/109 (38.53%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +L+  F  A++  R+ ++++ K N++  T  L+ K   E+A++YP++  E  ++D+C M+L+ NP  FDV+V  NL+GDI+SD  + L G LG+ PS + G  G+AL E
Sbjct:  162 ILHFAFKSAQSRPRKLLTSVDKQNVLA-TSKLWRKMADEIADEYPDVRLEHQLVDSCAMLLITNPQQFDVIVTENLFGDILSDEASSLAGSLGVMPSSSHGFNGLALYE 269          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BLOPB (3-isopropylmalate dehydrogenase OS=Blochmannia pennsylvanicus (strain BPEN) GN=leuB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + N+ F  A+   R+RVS+I KAN++  T  L+ +    +A+ YP++  E + IDN  M L+ NP+ FD+++ PNL+GDI+SD CA + G +G+ PS +I E    L E
Sbjct:  175 IANIAFKLAQKR-RKRVSSIDKANVLH-TSMLWREVVSHLAKNYPDVELEHLYIDNASMQLINNPSKFDIILCPNLFGDILSDECAMISGSIGMLPSASINEHNFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_RICTY (Isocitrate dehydrogenase [NADP] OS=Rickettsia typhi GN=icd PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            +++   F YA  + R++V+ + K NIM+ +DG+F +   E+A++YP+I  E  +ID     L   P  FD++V  NLYGDIISD+ A + G +GL  S NIG+
Sbjct:  153 KIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGIFHRVFNEIAKEYPQIDNEHYIIDIGTAKLATTPEIFDIIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ 255          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BLOFL (3-isopropylmalate dehydrogenase OS=Blochmannia floridanus GN=leuB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R+ V++I KAN++  T  L+ K   EVA  YP +  + + +DN  M L++NP+AFDV++ PNL+GDI+SD CA + G +G+ PS ++ E    L E
Sbjct:  188 RKHVTSIDKANVLH-TSMLWRKVVSEVASNYPNVHLQHLYVDNASMQLIRNPSAFDVILCPNLFGDILSDECAEINGSIGILPSASLNEHNFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_RICPR (Isocitrate dehydrogenase [NADP] OS=Rickettsia prowazekii GN=icd PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            +++   F YA  + R++V+ + K NIM+ +DG+F +   E+A++YP+I  E  +ID     L   P  FD++V  NLYGDIISD+ A + G +GL  S NIG+
Sbjct:  153 KIIRYAFEYAIKNNRKKVTCLTKDNIMKFSDGIFHRVFNEIAKEYPQINNEHYIIDIGTAKLATKPEIFDIIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ 255          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
IDH1_YEAST1.275e-1845.36Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LYS12_SCHPO1.666e-1846.81Probable homoisocitrate dehydrogenase OS=Schizosac... [more]
IDH2_KLULA1.666e-1843.27Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH_RICFE3.710e-1842.72Isocitrate dehydrogenase [NADP] OS=Rickettsia feli... [more]
LEU3_SULTO4.846e-1846.073-isopropylmalate dehydrogenase OS=Sulfolobus toko... [more]
LEU3_LACLA8.266e-1838.533-isopropylmalate dehydrogenase OS=Lactococcus lac... [more]
LEU3_BLOPB1.080e-1740.373-isopropylmalate dehydrogenase OS=Blochmannia pen... [more]
IDH_RICTY1.080e-1740.78Isocitrate dehydrogenase [NADP] OS=Rickettsia typh... [more]
LEU3_BLOFL1.410e-1742.713-isopropylmalate dehydrogenase OS=Blochmannia flo... [more]
IDH_RICPR1.410e-1740.78Isocitrate dehydrogenase [NADP] OS=Rickettsia prow... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
back to top