CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ECO57 (3-isopropylmalate dehydrogenase OS=Escherichia coli O157:H7 GN=leuB PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP+I    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDIELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_COLP3 (3-isopropylmalate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=leuB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 3
Query:   78 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +V+++ KAN++  T  L+ +   EVA +YP++  E + +DN  M LV++P  FDV++ PNL+GDI+SD+CA + G +GL PS ++   G  + E
Sbjct:  186 KVTSVDKANVLA-TSQLWRQVVEEVAVEYPDVELEHLYVDNAAMQLVRDPNQFDVMLCPNLFGDILSDICAMITGSMGLLPSASLNSDGFGMYE 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCTS (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Thelaxes suberi GN=leuB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++++ +I KAN++ K+  L+     ++A K+P +  E + IDN  M L+KNP++FDV++  NL+GDIISD CA +IG +GL PS ++ + G  L E
Sbjct:  187 KKKIVSIDKANVL-KSSILWRDTVNKMAYKFPNVKLEHMYIDNATMELIKNPSSFDVILCSNLFGDIISDECAAIIGSIGLLPSASLNKSGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SHISS (3-isopropylmalate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=leuB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SHIFL (3-isopropylmalate dehydrogenase OS=Shigella flexneri GN=leuB PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SHIDS (3-isopropylmalate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=leuB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SHIBS (3-isopropylmalate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=leuB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_HAEIN (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae GN=leuB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++V+++ KAN++Q +  L+ +   E+A+ YPE+T E + IDN  M L+K+P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E
Sbjct:  187 KKVTSVDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKSPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYE 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ECOUT (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=leuB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  188 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ECOLI (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain K12) GN=leuB PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_ECO576.998e-1742.713-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_COLP36.998e-1740.433-isopropylmalate dehydrogenase OS=Colwellia psych... [more]
LEU3_BUCTS6.998e-1741.673-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_SHISS9.139e-1741.673-isopropylmalate dehydrogenase OS=Shigella sonnei... [more]
LEU3_SHIFL9.139e-1741.673-isopropylmalate dehydrogenase OS=Shigella flexne... [more]
LEU3_SHIDS9.139e-1741.673-isopropylmalate dehydrogenase OS=Shigella dysent... [more]
LEU3_SHIBS9.139e-1741.673-isopropylmalate dehydrogenase OS=Shigella boydii... [more]
LEU3_HAEIN9.139e-1742.113-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_ECOUT9.139e-1741.673-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_ECOLI9.139e-1741.673-isopropylmalate dehydrogenase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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