CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ECOL6 (3-isopropylmalate dehydrogenase OS=Escherichia coli O6 GN=leuB PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELTHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_THETN (3-isopropylmalate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=leuB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 37/96 (38.54%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++++++ KAN+++ +  L+ K   EVA++YPE+    + +DNC M LVKNP  FDV++  N++GDI+SD  A ++G +G+ PS ++    + L E
Sbjct:  182 RKKITSVDKANVLESSR-LWRKTVEEVAKRYPEVELNHMYVDNCAMQLVKNPFQFDVILTNNMFGDILSDEAAQIVGSIGILPSASLRGDRVGLYE 276          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_HAEI8 (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=leuB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 40/95 (42.11%), Postives = 64/95 (67.37%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++V+++ KAN++Q +  L+ +   E+A+ YPE+T E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E
Sbjct:  187 KKVTSVDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEAGFGLYE 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SALTY (3-isopropylmalate dehydrogenase OS=Salmonella typhimurium GN=leuB PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SALPA (3-isopropylmalate dehydrogenase OS=Salmonella paratyphi A GN=leuB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SALCH (3-isopropylmalate dehydrogenase OS=Salmonella choleraesuis GN=leuB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_RICCN (Isocitrate dehydrogenase [NADP] OS=Rickettsia conorii GN=icd PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   30 ELLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            +++   F YA  + R++V  + K NIM+ +DG+  K   E+A++YP+I     +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIG+
Sbjct:  153 KIIRYAFEYAVKNNRKKVMCLSKDNIMKFSDGVLHKVFNEIAKEYPQINNAHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ 255          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_MANSM (3-isopropylmalate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=leuB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.036e-16
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++V+++ KAN++Q +  L+ +   E+A++YPE+  E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E
Sbjct:  186 RKQVTSVDKANVLQSSI-LWRETVAEIAKEYPEVQVENMYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYE 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVY (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  188 RKKVCSIDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_VIBPA (3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  188 RKKVCSIDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYE 282          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_ECOL69.139e-1741.673-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_THETN1.194e-1638.543-isopropylmalate dehydrogenase OS=Thermoanaerobac... [more]
LEU3_HAEI81.194e-1642.113-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_SALTY1.559e-1641.673-isopropylmalate dehydrogenase OS=Salmonella typh... [more]
LEU3_SALPA1.559e-1641.673-isopropylmalate dehydrogenase OS=Salmonella para... [more]
LEU3_SALCH1.559e-1641.673-isopropylmalate dehydrogenase OS=Salmonella chol... [more]
IDH_RICCN1.559e-1640.78Isocitrate dehydrogenase [NADP] OS=Rickettsia cono... [more]
LEU3_MANSM2.036e-1641.673-isopropylmalate dehydrogenase OS=Mannheimia succ... [more]
LEU3_VIBVY3.473e-1640.633-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_VIBPA3.473e-1640.633-isopropylmalate dehydrogenase OS=Vibrio parahaem... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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