CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_VIBCH (3-isopropylmalate dehydrogenase OS=Vibrio cholerae GN=leuB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 38/96 (39.58%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++V +I KAN++Q +  L+ +   E+A++YP+++   + IDN  M L+K+PA FDV++  N++GDI+SD CA + G +G+ PS ++ E    L E
Sbjct:  188 RKKVCSIDKANVLQSSI-LWREVVSEIAKEYPDVSLSHMYIDNATMQLIKDPAQFDVMLCSNIFGDILSDECAMITGSMGMLPSASMNESKFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SODGM (3-isopropylmalate dehydrogenase OS=Sodalis glossinidius (strain morsitans) GN=leuB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ K   +VA  YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  + E
Sbjct:  188 RGKVTSIDKANVLQSSI-LWRKVVSQVAPDYPDVALSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGMYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ERWCT (3-isopropylmalate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=leuB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 3
Query:   51 HYAKTHGRER---VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            H A    R+R   V++I KAN++Q +  L+ +   EVA+ YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  177 HIAFESARKRRSIVTSIDKANVLQSSI-LWREIVTEVAKAYPDVKLSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BACSK (3-isopropylmalate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=leuB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 39/109 (35.78%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +++  F +A+T  ++RV ++ KAN+++ +  L+ +   EVA +YP++T   +++DN  M L+++P  FDV+V  NL+GDI+SD  + + G LGL PS ++    + L E
Sbjct:  171 IVHQAFQFARTR-KKRVVSVDKANVLESSR-LWREIADEVAREYPDVTLSHMLVDNAAMQLIRDPRQFDVIVTENLFGDILSDEASMITGSLGLLPSASMNTSKVGLFE 277          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_YERPS (3-isopropylmalate dehydrogenase OS=Yersinia pseudotuberculosis GN=leuB PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +    +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RSKVTSIDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_YERPE (3-isopropylmalate dehydrogenase OS=Yersinia pestis GN=leuB PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +    +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  187 RSKVTSIDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  188 RKKVCSIDKANVLQSSI-LWREVVEELAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_DESVH (3-isopropylmalate dehydrogenase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + RV ++ KAN++  T  L+ +   EVA  YP++    + +DN  M LV+ PA FDV+V  NL+GDI+SD  A + G +G+ PS ++G GG AL E
Sbjct:  184 KRRVCSVDKANVLA-TSRLWREVVEEVARDYPDVELSHMYVDNAAMQLVRWPAQFDVIVTGNLFGDILSDEAAVITGSIGMLPSASMGSGGPALFE 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_VIBF1 (3-isopropylmalate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=leuB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + V +I KAN++Q +  L+ +   EVA+ YP++T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  189 KNVYSIDKANVLQSSI-LWREVVEEVAKGYPDVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESNFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCDN (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Diuraphis noxia GN=leuB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 39/109 (35.78%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + ++ F  A++  + ++ +I KAN+++ +  L+ +   EV+++YP++    + IDN CM ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  175 IAHLAFKLARSR-KHKLCSIDKANVLESSI-LWREVVEEVSKEYPDVILSHLYIDNVCMQIIKDPNQFDVLLCSNLFGDIISDECAMITGSIGMLPSASLNEKNFGLYE 281          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_VIBCH3.473e-1639.583-isopropylmalate dehydrogenase OS=Vibrio cholerae... [more]
LEU3_SODGM3.473e-1640.633-isopropylmalate dehydrogenase OS=Sodalis glossin... [more]
LEU3_ERWCT3.473e-1640.573-isopropylmalate dehydrogenase OS=Erwinia carotov... [more]
LEU3_BACSK4.536e-1635.783-isopropylmalate dehydrogenase OS=Bacillus clausi... [more]
LEU3_YERPS5.924e-1640.633-isopropylmalate dehydrogenase OS=Yersinia pseudo... [more]
LEU3_YERPE5.924e-1640.633-isopropylmalate dehydrogenase OS=Yersinia pestis... [more]
LEU3_VIBVU5.924e-1640.633-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_DESVH5.924e-1642.713-isopropylmalate dehydrogenase OS=Desulfovibrio v... [more]
LEU3_VIBF17.737e-1641.053-isopropylmalate dehydrogenase OS=Vibrio fischeri... [more]
LEU3_BUCDN7.737e-1635.783-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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