CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAP (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=leuB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + N+ F  A +  R +V +I KAN+++ +  L+ +  ++V++ YP++    + IDN CM ++KNP  FD+L+  N++GDIISD CA + G +G+ PS ++      L E
Sbjct:  175 IANLAFELASSR-RCKVCSIDKANVLESSV-LWREIVKKVSKNYPDVHLSHLYIDNACMQIIKNPTQFDILLCSNIFGDIISDECAMITGSIGMLPSASLNNQKFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: DLPA_LEGPH (Protein dlpA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dlpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG 344
            L +  F +A   G  RV+   K N+++++     K     A++YP+I  + + +D   + L+K+P  F V+V  N++GDI+SD+ AG++GGLGL PS NIG+ G
Sbjct:  185 LFDFAFKHAMQTGMPRVTLADKPNVLRESGEFTRKIFESTAQRYPKIQADILNVDAVALWLIKSPEKFGVIVAENMFGDILSDVGAGVMGGLGLAPSANIGDKG 288          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PHOLL (3-isopropylmalate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=leuB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 37/94 (39.36%), Postives = 63/94 (67.02%), Query Frame = 3
Query:   78 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +V++I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+P+ FDV++  N++GDI+SD CA + G +G+ PS ++ E G  L E
Sbjct:  189 KVTSIDKANVLQSSV-LWREVVTEIAKAYPDVEINHMYIDNATMQLIKDPSQFDVMLCSNIFGDILSDECAMITGSMGMLPSASLNEKGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SALTI (3-isopropylmalate dehydrogenase OS=Salmonella typhi GN=leuB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R +V++I KAN++Q +  L+ +   +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E    L E
Sbjct:  187 RRKVTSIDKANVLQSSI-LWREIVNDVAKAYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQEFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PSEHT (3-isopropylmalate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=leuB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 3
Query:   81 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            V+++ KAN++  +  L+ +   EV++ YPE+  + + +DN  M LVK P+ FDVL+  NL+GDI+SD CA + G +GL PS ++ + G  L E
Sbjct:  190 VTSVDKANVLASSV-LWREVVTEVSKDYPEVKLDYIYVDNAAMQLVKQPSQFDVLLCDNLFGDILSDECAMITGSMGLLPSASLNQSGFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PASMU (3-isopropylmalate dehydrogenase OS=Pasteurella multocida GN=leuB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + V+++ KAN++  +  L+ +   +VA+ YPE+T + + IDN  M L+K P  FDVL+  N++GDIISD CA + G +G+ PS ++ E G  L E
Sbjct:  187 KHVTSVDKANVLISSV-LWREVVCDVAKDYPEVTLDHIYIDNATMQLIKQPEFFDVLLCSNIFGDIISDECAMITGSMGMLPSASLNEKGFGLYE 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_CHLTE (3-isopropylmalate dehydrogenase OS=Chlorobium tepidum GN=leuB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 37/101 (36.63%), Postives = 63/101 (62.38%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            +  + F YA+  G  +V++I KAN+++ +   +     EV + +PEI   ++ +DN  M +V+NP  F+V+V  NL+GDI+SD+   + G LG+ PS +IG
Sbjct:  167 IARLAFEYAQKRGNAKVTSIDKANVLEVSQ-FWRNIVHEVHQDFPEIELVDMYVDNAAMQVVRNPKQFEVIVTSNLFGDILSDISGMITGSLGMLPSASIG 266          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 35/89 (39.33%), Postives = 60/89 (67.42%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            R++++++ KAN+++    L+ +   E  E YP++  E + IDNC M LV+ P +FDV+V  N++GDI+SD    ++G LG+ PS +IG+
Sbjct:  184 RKKLTSVDKANVLE-VSALWRQIVEEEKENYPDVELEHLYIDNCAMQLVRRPTSFDVIVTGNIFGDILSDEAGVVVGSLGMLPSASIGD 271          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PELCD (3-isopropylmalate dehydrogenase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.251e-15
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +  + F  A+  G++ VS I KAN++  T  L+ +    V+  YP++    + +DN  M LVK P  FDVL+ PN++GDI+SD  A L G LG+ PS ++ EG   + E
Sbjct:  175 ITRVAFDAARKRGKKLVS-IDKANVLS-TSVLWREVVERVSADYPDVVLSHMYVDNAAMQLVKAPKQFDVLLCPNMFGDILSDEAAMLTGSLGMLPSASLAEGSFGMYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PHOPR (3-isopropylmalate dehydrogenase OS=Photobacterium profundum GN=leuB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.940e-15
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + V +I KAN++Q +  L+ +   EVA+ YPE+T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ +    + E
Sbjct:  188 KNVYSIDKANVLQSSI-LWREVVEEVAKDYPEVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNQEKFGMYE 281          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_BUCAP7.737e-1635.783-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
DLPA_LEGPH7.737e-1637.50Protein dlpA OS=Legionella pneumophila subsp. pneu... [more]
LEU3_PHOLL1.010e-1539.363-isopropylmalate dehydrogenase OS=Photorhabdus lu... [more]
LEU3_SALTI1.320e-1540.633-isopropylmalate dehydrogenase OS=Salmonella typh... [more]
LEU3_PSEHT1.320e-1540.863-isopropylmalate dehydrogenase OS=Pseudoalteromon... [more]
LEU3_PASMU1.320e-1541.053-isopropylmalate dehydrogenase OS=Pasteurella mul... [more]
LEU3_CHLTE1.724e-1536.633-isopropylmalate dehydrogenase OS=Chlorobium tepi... [more]
LEU3_AQUAE1.724e-1539.333-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]
LEU3_PELCD2.251e-1538.533-isopropylmalate dehydrogenase OS=Pelobacter carb... [more]
LEU3_PHOPR2.940e-1540.003-isopropylmalate dehydrogenase OS=Photobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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