CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_STRR6 (3-isopropylmalate dehydrogenase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++   F  A+   R+ V++I K N++  T  L+ K   EVA+ +P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E
Sbjct:  164 IIRKAFEIARNR-RKIVTSIDKQNVLA-TSKLWRKVAEEVAQDFPDVTLEHQLVDSAAMLMITNPAKFDVIVTENLFGDILSDESSVLSGTLGVMPSASHSENGPSLYE 270          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_MOOTA (3-isopropylmalate dehydrogenase OS=Moorella thermoacetica (strain ATCC 39073) GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R  ++++ KAN++  T  L+     ++  ++PE+T E + +DNC M LV+ PA FDV+V  N +GDI+SD  + L G +G+ PS +IG G +AL E
Sbjct:  182 RCHLTSVDKANVLT-TSRLWRDTVEDIKGEFPEVTVEHMYVDNCAMQLVRRPAQFDVIVTENTFGDILSDQASVLTGSIGMLPSASIG-GAVALYE 275          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_LISMO (3-isopropylmalate dehydrogenase OS=Listeria monocytogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++   F  A T  + +V+++ KAN++  +  L+ K   EVA ++P+IT E + ID   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E
Sbjct:  165 IIEKAFEIAATRNK-KVTSVDKANVLASSK-LWRKIAEEVASRHPDITLEHLYIDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYE 271          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_LISIN (3-isopropylmalate dehydrogenase OS=Listeria innocua GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 39/109 (35.78%), Postives = 67/109 (61.47%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++   F  A T  + +V+++ KAN++  +  L+ K   EVA ++P+IT E + +D   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E
Sbjct:  165 IIEKAFEIASTRNK-KVTSVDKANVLASSK-LWRKIAEEVASRHPDITLEHLYVDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYE 271          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_CORA7 (3-isopropylmalate dehydrogenase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG 344
            R+ V+ +HK N++    GL+ +   EVA+++PE+T +   ID   + +V +PA +DV+V  NL+GDI++DL   + GG+GL  S NI   G
Sbjct:  171 RKHVTLVHKTNVLVNAGGLWQRTVNEVAQEFPEVTVDYNHIDAATIYMVTDPARYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDASG 261          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_CLAMS (3-isopropylmalate dehydrogenase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG 344
            F  A+   R+RV+ +HK N++     L+ +    VA ++P++T + + +D   + LV +P+ FDV+V  NL+GDII+DL A + GG+GL  S N+   G
Sbjct:  174 FELAEKRDRKRVTLVHKTNVLTFAGSLWQRTVDRVAAEHPDVTVDYLHVDATMIFLVTDPSRFDVIVSDNLFGDIITDLAAAISGGIGLAASGNVNPTG 272          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUO (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon obscurum GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + ++ F  A++    +V +I K+N++  +  L+ +  ++V++ YP++    + IDN  M ++KNP  FDVL+ PNL+GDIISD CA + G +G+ PS ++ E    L E
Sbjct:  176 IAHLAFQLAQSRSH-KVCSIDKSNVLNSSI-LWKEIVQKVSKNYPDVDLSHLYIDNAIMQIIKNPNQFDVLLCPNLFGDIISDECAIITGSIGMLPSASLNEKKFGLYE 282          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCRP (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=leuB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + ++ F  A +  R +V +I K+N++  +  L+ +   EV++ YP I    + IDN CM ++KNP+ FDVL+  N++GDIISD CA + G +G+ PS ++      L E
Sbjct:  175 IAHLAFELASSR-RCKVCSIDKSNVLASSI-LWREIVEEVSKNYPNIILSHLYIDNACMQIIKNPSQFDVLLCSNIFGDIISDECAMITGSIGMLPSASLNSKKFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAI (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=leuB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            + ++ F  A++  +++V +I K+N++Q +  L+ +    V++KYP++    + IDN  M ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS +  E    L E
Sbjct:  175 IAHLAFKLARSR-KKKVCSIDKSNVLQSSI-LWREVVESVSKKYPDVHLSHLYIDNAAMQIIKDPNQFDVLLCSNLFGDIISDECATITGSIGMLPSASFNEKNFGLYE 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_METCA (3-isopropylmalate dehydrogenase OS=Methylococcus capsulatus GN=leuB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            F  A+   R R+ +I KAN+++ T+ L+ +   EV + YP++    + +DN  M LV+NP  FDV++  N++GDI+SD  A L G +G+ PS ++ E G  + E
Sbjct:  177 FQIARKRNR-RLCSIDKANVLECTE-LWREVVIEVGKDYPDVALSHMYVDNAAMQLVRNPKQFDVMLTDNMFGDILSDCAAMLTGSIGMLPSASLAESGKGMYE 278          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_STRR65.015e-1538.533-isopropylmalate dehydrogenase OS=Streptococcus p... [more]
LEU3_MOOTA5.015e-1540.633-isopropylmalate dehydrogenase OS=Moorella thermo... [more]
LEU3_LISMO5.015e-1536.703-isopropylmalate dehydrogenase OS=Listeria monocy... [more]
LEU3_LISIN5.015e-1535.783-isopropylmalate dehydrogenase OS=Listeria innocu... [more]
LEU3_CORA75.015e-1539.563-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_CLAMS5.015e-1537.373-isopropylmalate dehydrogenase OS=Clavibacter mic... [more]
LEU3_BUCUO5.015e-1535.783-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BUCRP5.015e-1536.703-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BUCAI5.015e-1535.783-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_METCA6.550e-1537.503-isopropylmalate dehydrogenase OS=Methylococcus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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