CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.785e-20
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+DFVGDSRSSIFDAKAGIALSKKFVK+V+WYDNEWGYS+RVVDLI HMA
Sbjct:  284 VSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.332e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 160
            VSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  287 VSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.332e-20
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  284 VSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.045e-20
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF+GD+RSSIFDAKAGI+L+  FVKLVSWYDNEWGYSTRVVDLI+H++K Q
Sbjct:  284 VSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.045e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 160
            VSTDFVGD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYSTRVVDLI H+ KT
Sbjct:  284 VSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.977e-20
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  284 VSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.194e-20
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+ DSRSSIFDAKAGIALS  FVKLV+WYDNEWGYS RVVDLIVHMAK
Sbjct:  286 VSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+GD+RSSIFDAKAGIAL+ KFVKLVSWYDNE GYSTRVVDLIVH+AK
Sbjct:  285 VSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.860e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 160
            VSTDFVGD+RSSIFDAKAGI L+  FVKLVSWYDNEWGYS+RVVDLI HM+KT
Sbjct:  284 VSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  252 VSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3PC_CRAPL1.785e-2090.20Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA2.332e-2084.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE2.332e-2087.04Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR3.045e-2081.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA3.045e-2084.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE3.977e-2085.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA5.194e-2088.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA6.784e-2088.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU8.860e-2084.91Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_HORVU1.157e-1985.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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