CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+G+S RVVD++  ++K
Sbjct:  280 VSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  SSIFD  AGIAL+K FVKL+SWYDNEWGYS R  DL+ + AK
Sbjct:  281 VSTDFTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF  +  SS FDA+AGI+L+ +FVKLV+WYDNEWGYS RV DL+VH+AK
Sbjct:  328 VSTDFETEPISSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVAK 379          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  269 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF+ D+ SS+F+ KAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  279 VSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF G+  SSIFDAKAGIAL+  FVKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  386 VSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DFV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H+AK
Sbjct:  284 VSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P1_CANGA1.121e-1469.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PHACH1.464e-1469.23Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3PA_GUITH1.464e-1469.23Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_SPECI1.912e-1468.52Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SHEEP1.912e-1468.52Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_PIG1.912e-1468.52Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_DROHY1.912e-1468.00Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_BOVIN1.912e-1468.52Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3PT_MOUSE1.912e-1474.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_CHLRE1.912e-1471.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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