CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  285 VSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMVQKE 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VS+DFVGD+ SSIFDA AGI+L+  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  282 VSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  280 VSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  285 VSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMIQKE 338          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P1_ANASP1.912e-1464.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PT_DANRE2.497e-1470.00Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_SHIFL2.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY2.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI2.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF32.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI2.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.497e-1469.23Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ANAVT2.497e-1464.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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