CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS+DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  282 VSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+D  GD+ S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  281 VSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  280 VSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+D  GD  S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  281 VSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  280 VSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P_HUMAN3.261e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA5.562e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_COCIM5.562e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P3_CAEEL5.562e-1472.55Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL5.562e-1472.55Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_MUSPF9.488e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CRIGR9.488e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_COCP79.488e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_CANFA9.488e-1466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P3_CAEBR9.488e-1470.59Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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