CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            V+TDF GD+R+SIFDA+AGIAL   F+K+VSWYDNEWGYS +V+++   +AK
Sbjct:  281 VATDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF   + SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS+D   D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  282 VSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDFVG + SSIFD+ AGI L+  FVKL++WYDNE+GYS RVVDL+ ++A+
Sbjct:  279 VSTDFVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS DF+G   SSIFDA+AGI L+  FVKL+ WYDNEWGYS RV DL+V  A+
Sbjct:  280 VSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLLVFAAE 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VS+DF+GD+ SS+FDA AGI+ +  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  282 VSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS DF  D RSSIFDA AGI L+  F K+VSWYDNEWGYS RV+DL++ MA
Sbjct:  283 VSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.761e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  280 VSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P2_CAEBR9.488e-1470.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_RALSO1.618e-1363.46Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_RABIT1.618e-1366.67Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_PONAB1.618e-1364.81Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_PLESA1.618e-1365.38Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_LYOSH1.618e-1365.38Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P1_CAEEL1.618e-1372.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_ONCMY2.114e-1364.00Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P1_SYNY32.114e-1368.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RAT2.761e-1364.81Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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