CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.761e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  280 VSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.761e-13
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI ++A
Sbjct:  287 VSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+  + SS FDA+AGIAL+  FVKL++WYDNE+GYS RVVDLI +M K
Sbjct:  282 VSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.709e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+DFVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS RVVDLI + A
Sbjct:  287 VSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.709e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+G   SSIFDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  281 VSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.709e-13
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDFV D  SSIFD  A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  288 VSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.150e-13
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G+  +SIFDAKAG++L+K FVKL++WYDNE GYS++V+DL+  ++K
Sbjct:  280 VSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.150e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS DF+ DSRSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  297 VSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF G + +S+FDA AGIAL+  FVKLVSWYDNE GYS +V+DL+ H+
Sbjct:  285 VSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHI 334          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS DF+ D+RSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  297 VSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P_MOUSE2.761e-1364.81Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_BRUMA2.761e-1366.67Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_ECHMU3.605e-1367.31Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_ONCVO4.709e-1368.63Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CHLPN4.709e-1363.46Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P4_CAEEL4.709e-1370.59Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P_BUCAI6.150e-1361.54Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PG_TRYBB6.150e-1361.82Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_HAEIN1.049e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PG_TRYCR1.049e-1260.00Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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