CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VS+DF+G   SS+FDA+AG+AL+ +F KLV+WYDNE GY+TR+VDL+ ++
Sbjct:  280 VSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYV 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 142
            VSTDF G   +SIFDAKAG++L+K F KL+SWYDNE GYS++V+DL+
Sbjct:  280 VSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLV 326          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VS+DF+G   SS+FDA+AG+AL+ +F KL++WYDNE GY+TR+VDL+ ++
Sbjct:  281 VSSDFIGCEYSSVFDAQAGVALNDRFFKLIAWYDNEIGYATRIVDLLEYI 330          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 148
            VS+DF G + +S+FD KAGI+L+  FVKLVSWYDNE GYS +V+DLI+H
Sbjct:  279 VSSDFNGVALTSVFDVKAGISLNDHFVKLVSWYDNETGYSHKVLDLILH 327          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.880e-12
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVV 133
            VS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVV
Sbjct:  191 VSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVV 234          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 139
            VS+DF G++ +SIFDAKAG++L+  F+KLVSWYDNE GYS++V+DL
Sbjct:  280 VSSDFNGNTLTSIFDAKAGLSLNNNFIKLVSWYDNECGYSSKVLDL 325          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  G   +S+FDA+AGI+L+  FVKLVSWYDNE GYS +V DLI H+ K
Sbjct:  280 VSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYSNKVHDLIAHITK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.584e-11
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VS+DF+ D+RSSI+D+KA +  +    K+F K+VSWYDNEWGYS RVVDL+  M
Sbjct:  298 VSSDFINDARSSIYDSKATLQNNLPGEKRFFKVVSWYDNEWGYSHRVVDLVRFM 351          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.375e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS DF+ D+RSS++D+KA +  +    K+F K+VSWYDNEW YS RVVDL+ +MA
Sbjct:  298 VSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 352          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 139
            VSTDF G + +SI+D+KAGI+L   F K+VSWYDNEWGYS +V ++
Sbjct:  281 VSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEM 326          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P_CHLTR3.052e-1260.00Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_BUCAP3.052e-1265.96Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_CHLMU3.986e-1258.00Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_LEIME6.800e-1265.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MELGA8.880e-1277.27Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BUCBP1.160e-1165.22Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_TRYBB1.515e-1161.54Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PG_CRIFA2.584e-1159.26Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_LEIME3.375e-1156.36Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BACFR4.407e-1160.87Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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