CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-17
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  280 VSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.847e-17
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            V+TD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  281 VTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS+DF GDSRSSIFDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DL+ HM K
Sbjct:  278 VSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD +GD+ SSIFDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI +++K
Sbjct:  283 VSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF+GD+ SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+A
Sbjct:  279 VSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.151e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 148
            VS+DFVG+  SSIFDAKAGIAL K FVKLVSWYDNEWGYS RVVDL++H
Sbjct:  286 VSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.151e-17
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD  GD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI +++K
Sbjct:  281 VSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.375e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  278 VSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.020e-17
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV +AK
Sbjct:  282 VSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P2_YEAST1.083e-1780.77Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_CURLU1.847e-1776.92Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_TRISI2.413e-1777.78Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_HOMAM2.413e-1776.92Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_ASPOR2.413e-1775.00Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASHGO2.413e-1780.39Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_MASBA3.151e-1781.63Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_EMENI3.151e-1776.92Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_PANVR5.375e-1778.85Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_YARLI7.020e-1776.92Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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