CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  GDSRSSIFDA AGIAL+  F+KL+SWYDNEWGYS RVVDLI ++AK
Sbjct:  281 VSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.043e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDFVGDS SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  355 VSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GD+ SSIFDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ HMA  +
Sbjct:  280 VSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DFVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  283 VSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF G++ SSIFDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +A+
Sbjct:  281 VSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDFVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  279 VSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF+ D  S IFDA AGI L+ KF KLV+WYDNEWGYS RVVDLI H++K Q
Sbjct:  282 VSTDFIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDLIAHISKVQ 335          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  282 VSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI +++K
Sbjct:  281 VSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P_AJECA1.564e-1675.00Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PT_MACFA2.043e-1680.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_XENLA2.668e-1674.07Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_SCHMA2.668e-1676.92Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_OMPOL2.668e-1673.08Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_GLOMM2.668e-1676.00Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3PC_CHOCR2.668e-1670.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_TRIKO2.668e-1671.15Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P1_SCHPO2.668e-1676.47Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_ASPNG3.484e-1675.00Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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