CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD  GD+ SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  282 VSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+DF+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H+A
Sbjct:  279 VSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  281 VSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI ++A+
Sbjct:  282 VSSDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  281 VSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD  G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H+AK
Sbjct:  281 VSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RVVDLI ++AK
Sbjct:  280 VSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS+DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  310 VSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P2_SCHPO3.484e-1676.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_SCLSC4.550e-1673.08Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P1_KLUMA4.550e-1674.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_TRIAT7.762e-1671.15Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_MONAN7.762e-1673.08Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_DEBHA7.762e-1675.00Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CRYPA7.762e-1675.00Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P1_YEAST7.762e-1673.08Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_JACOR7.762e-1674.07Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_COTJA1.014e-1574.07Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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