CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+ +M
Sbjct:  378 VSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF+GD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  354 VSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 403          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  279 VSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS DF+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V MA+
Sbjct:  282 VSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI ++AK
Sbjct:  281 VSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  280 VSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 160
            VS+DF+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  280 VSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HMA  +
Sbjct:  280 VSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H+A
Sbjct:  281 VSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P_COLLI1.014e-1574.07Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3PT_RAT1.014e-1580.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN1.014e-1576.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_KLULA1.014e-1575.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_USTMA1.324e-1571.15Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_CRYCU1.324e-1571.15Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CHICK1.324e-1574.07Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_ZYGRO1.729e-1571.70Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_DANRE1.729e-1572.22Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CANAL1.729e-1574.51Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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