CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  279 VSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  279 VSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  279 VSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  279 VSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++AK
Sbjct:  281 VSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  341 VSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 163
            VSTDF+ +  S +FDA AGI L+ +F KLV+WYDNEWGYS RVVDLI H+AK Q
Sbjct:  282 VSTDFIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVAKLQ 335          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ ++AK
Sbjct:  281 VSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 151
            VSTDF  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  279 VSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDFVG + S IFDAKAGIAL+ +F+KLV+WYDNEWGY+ RV D +V++AK
Sbjct:  284 VSTDFVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVAK 335          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P3_KLUMA1.729e-1575.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA1.729e-1575.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P2_DROPS1.729e-1572.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.729e-1572.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_SORMA2.258e-1573.08Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3PT_BOVIN2.258e-1574.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_GRAVE2.258e-1566.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CLAPU2.949e-1567.31Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P1_DROME2.949e-1572.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P1_AGABI2.949e-1569.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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