CF504079

Overview
NameCF504079
Unique NameCF504079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:232..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+DF+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H+A
Sbjct:  279 VSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.031e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  281 VSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.571e-15
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF GDS SS FDA+ GI+L+  FVKLVSWYDNEWGYS RV DL+ ++A
Sbjct:  282 VSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.582e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+D  G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ ++AK
Sbjct:  281 VSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.582e-15
Identity = 36/51 (70.59%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ ++A
Sbjct:  281 VSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.582e-15
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTD +G++ SSIFDAKAGI+L+  FVKLV+WYDNEW YS RV+DLI ++A
Sbjct:  282 VSTDLIGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.582e-15
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 154
            VSTDF+G + SSIFDA+AGIAL+  FVKLVSWYDNE+GYS RV DLI ++A
Sbjct:  282 VSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.582e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTD + D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV+++K
Sbjct:  280 VSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VSTDF+ D+ S +FDAKAGI LS  FVKL++WYDNEWGYS RV +L+ ++AK
Sbjct:  280 VSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of CF504079 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 VSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 157
            VS+DFVG+  SS+FDA AGI L+  FVKL++WYDNE+GYS RVVDL+VH AK
Sbjct:  281 VSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAK 332          
The following BLAST results are available for this feature:
BLAST of CF504079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3P1_KLULA3.852e-1570.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_NEUCR5.031e-1571.15Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_PHARH6.571e-1570.59Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_PODAN8.582e-1569.23Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_PICCI8.582e-1570.59Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ERYGR8.582e-1568.63Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_CRYNE8.582e-1572.55Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_TRIKO8.582e-1571.15Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P2_AGABI1.121e-1465.38Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_RHIRA1.121e-1469.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-567 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504079 ID=CF504079; Name=CF504079; organism=Citrus sinensis; type=EST; length=301bp
GGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCA
AGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTAT
GACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACAT
GGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTT
AGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTGTGTTT
CTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCA
G
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