CF504080

Overview
NameCF504080
Unique NameCF504080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ G
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAG 73          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  G
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAG 103          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  G
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAG 103          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.867e-21
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  G
Sbjct:   29 AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAG 103          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A  Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  G
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAG 103          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A  Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  G
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAG 103          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 2
Query:  161 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  G
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTG 208          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.099e-20
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q  +REAL  A+ EEM  D +VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPI+E GF+GIGVGAA  G
Sbjct:  138 QQTLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEG 209          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  128 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            ++R  +S    + VR+ALN+ALDEE+  D +VFL+GEEV +Y GAYKISKGL +KYG  R+ DTPITE    G+ VGAA  G
Sbjct:   23 SVRRLASGTLNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNG 104          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            + + ++ EALN  + EE+  DPKVF++GE++G Y G+YK++KGL EKYG  R+LDTPI E  FTGI +GAA  G
Sbjct:    1 MSEKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTG 74          
The following BLAST results are available for this feature:
BLAST of CF504080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ODPB_RICPR6.024e-2163.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RAT6.024e-2160.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE6.024e-2160.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN7.867e-2160.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB1.753e-2058.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN1.753e-2058.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME2.990e-2064.79Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO5.099e-2062.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU1.136e-1956.10Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHAVU2.142e-1854.05Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-568 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504080 ID=CF504080; Name=CF504080; organism=Citrus sinensis; type=EST; length=375bp
GATCGCTGGTAACTTTCACTTCTGGGCAGGGTTTTCATTGAAACAGTTAA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGCGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTT
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