CF504080

Overview
NameCF504080
Unique NameCF504080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:64..438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            + +M++ EAL   L EEM  DPKV +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  G
Sbjct:    1 MSEMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            ++++ EAL  ALDEEM  DP V +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  G
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            ++++ EAL   L EEM  DP+V +MGE+VG Y G+YK++KG  E+YG  R+LDTPI E  FTG+ +GAA  G
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.619e-16
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            ++ + EAL  A+DEEM+ D +VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  G
Sbjct:    4 KLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTG 75          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.467e-16
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  161 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +G
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.467e-16
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  161 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +G
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            +  M + EAL +A+DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLD PI E  FTG+ +GAA  G
Sbjct:    1 MSMMFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            + ++ + +AL +A DEEM+ DP V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  G
Sbjct:    1 MSKIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  173 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            EALN A+DEEM+ + KV L+GE++G Y G+YK+++ L  KYG  RV+DTPI E  F G  +GAA  G
Sbjct:    8 EALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.451e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            ++++ +AL  A DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  F G+ +GAA  G
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITG 74          
The following BLAST results are available for this feature:
BLAST of CF504080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ODPB_STAPU6.233e-1855.41Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL1.063e-1756.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.176e-1652.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.619e-1654.17Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET84.467e-1650.702-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET24.467e-1650.702-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_CYACA7.620e-1652.70Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE2.217e-1551.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI4.939e-1553.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL6.451e-1551.39Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-568 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504080 ID=CF504080; Name=CF504080; organism=Citrus sinensis; type=EST; length=375bp
GATCGCTGGTAACTTTCACTTCTGGGCAGGGTTTTCATTGAAACAGTTAA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGCGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTT
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