CF504080

Overview
NameCF504080
Unique NameCF504080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  173 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            EAL  A+DEEM  + +V L+GE++G Y G+YK+++GL  KYG  RV+DTPI E  F G  VGAA  G
Sbjct:    8 EALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  173 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            +A+N A+ EEM  D +VF++GE+VG   G +K + GL E++G ERV+DTP+ E+   G+G+GAA YG
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            + ++ + +AL +A DEEM  D  V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  G
Sbjct:    1 MSKVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITG 74          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  152 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            V+ + + +ALN+ L + + ADPKV ++GE+VG   G +++++GL  ++G  RV+DTP+ EAG  G  +G A  G
Sbjct:   14 VQSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRG 87          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  173 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            EAL +A+D  +  DP V L G++ G   G ++ +KGL +KYG ERV D PI EA   GIGVGAA  G
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGG 77          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  173 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            EALN+A+D  +  D  V L G++ G   G ++ +KGL +KYG ERV D PI E    GIGVGAA  G
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGG 76          
The following BLAST results are available for this feature:
BLAST of CF504080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ODPB_CHLAT1.100e-1453.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU1.100e-1449.252-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_PORPU4.181e-1450.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX5.111e-1240.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN1.139e-1150.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE7.380e-1149.25Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-568 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504080 ID=CF504080; Name=CF504080; organism=Citrus sinensis; type=EST; length=375bp
GATCGCTGGTAACTTTCACTTCTGGGCAGGGTTTTCATTGAAACAGTTAA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGCGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTT
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