CF504087

Overview
NameCF504087
Unique NameCF504087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13073 contig Csv1_Contig13073:290..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLAA_ARATH (Probable mannan synthase 10 OS=Arabidopsis thaliana GN=CSLA10 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.028e-19
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   79 FWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            F+    +  VWR+ A+EE+GGW +RTTVEDMD+AVRA L GWKF+FLND+    E+P  ++A+R
Sbjct:  285 FFSFNGTAGVWRMAAMEEAGGWHDRTTVEDMDLAVRAGLLGWKFVFLNDLTVKSELPSKFKAFR 348          

HSP 2 Score: 35.8094 bits (81), Expect = 1.028e-19
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 2
Query:    2 LTRPQNINLSFHFEVEQQVNGVFLSFFGFNGTA 100
            +TR Q ++L++HF  EQ+      +FF FNGTA
Sbjct:  260 MTRMQEMSLNYHFMAEQESGSTRHAFFSFNGTA 292          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA5_ORYSJ (Probable mannan synthase 5 OS=Oryza sativa subsp. japonica GN=CSLA5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.737e-19
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   79 FWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAY 267
            F+    +  VWR +A+ ++GGW +RTTVEDMD+AVRA L GWKFI+L D++   E+P +Y+AY
Sbjct:  297 FFSFNGTAGVWRTEAINDAGGWKDRTTVEDMDLAVRATLKGWKFIYLGDLRVKSELPSTYKAY 359          

HSP 2 Score: 36.965 bits (84), Expect = 1.737e-19
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 2
Query:    2 LTRPQNINLSFHFEVEQQVNGVFLSFFGFNGTA 100
            LTR Q   L +HF+ EQ+      +FF FNGTA
Sbjct:  272 LTRIQKTFLDYHFKAEQEAGSATFAFFSFNGTA 304          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA6_ORYSJ (Probable mannan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLA6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.847e-18
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   79 FWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            F+    +  VWR + ++ESGGW +RTT EDMD+A+RA L GW+F+++  +K   E+P + +AYR
Sbjct:  304 FFGYNGTAGVWRRQVIDESGGWEDRTTAEDMDLALRAGLLGWEFVYVGSIKVKSELPSTLKAYR 367          

HSP 2 Score: 41.2022 bits (95), Expect = 1.847e-18
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 2
Query:    2 LTRPQNINLSFHFEVEQQVNGVFLSFFGFNGTA 100
            LTR Q +++ +HF+VEQ+      +FFG+NGTA
Sbjct:  279 LTRMQEMSMDYHFKVEQEAGSSLCNFFGYNGTA 311          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA3_ORYSJ (Probable mannan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLA3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   31 FSFRGGTTG*RSISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            + F+    G  S    F F   +  VWRI ALEE+GGW +RTTVEDMD+AVRA L GWKF++L DVK   E+P + + YR
Sbjct:  263 YHFKVEQEGGSSTFAFFGFN-GTAGVWRISALEEAGGWKDRTTVEDMDLAVRAGLKGWKFVYLADVKVKSELPSNLKTYR 341          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLAB_ORYSJ (Probable mannan synthase 11 OS=Oryza sativa subsp. japonica GN=CSLA11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.317e-15
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S+   F F   +  VWRI A++++GGW +RTTVEDMD+AVRA L GWKF+++ DVK   E+P +++AYR
Sbjct:  277 SVYSFFGFN-GTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVKSELPSTFKAYR 344          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA3_ARATH (Probable mannan synthase 3 OS=Arabidopsis thaliana GN=CSLA3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.721e-15
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            SI   F F   +  VWRI AL E+GGW +RTTVEDMD+AVRA L+GWKF++++DV+   E+P +++AYR
Sbjct:  279 SIHAFFGFN-GTAGVWRIAALNEAGGWKDRTTVEDMDLAVRACLHGWKFVYVHDVEVKNELPSTFKAYR 346          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA1_ORYSJ (Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza sativa subsp. japonica GN=CSLA1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S+   F F   +  VWR+ A+ E+GGW +RTTVEDMD+A+RA L GWKF++L DV+   E+P +++A+R
Sbjct:  243 SVCAFFGFN-GTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQVKSELPSTFKAFR 310          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA2_ORYSJ (Probable mannan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLA2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.540e-15
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S    F+    +  VWR+ A+ +SGGW +RTTVEDMD+AVRA L GW+F+++ D++   E+P +++AYR
Sbjct:  301 SFMHAFFGFNGTAGVWRVSAINQSGGWKDRTTVEDMDLAVRASLKGWEFLYVGDIRVKSELPSTFQAYR 369          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA4_ORYSJ (Probable mannan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLA4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S+   F F   +  VWR+ A+ E+GGW +RTTVEDMD+AVRA L GW+F+++ D++   E+P +++AYR
Sbjct:  271 SMHSFFGFN-GTAGVWRVSAINEAGGWKDRTTVEDMDLAVRASLKGWQFLYVGDIRVKSELPSTFKAYR 338          
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA9_ORYSJ (Probable mannan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLA9 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.457e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S +  F+    +  VWRI A+ E+GGW +RTTVEDMD+AVRA L GWKF++L D+    E+P +++A+R
Sbjct:  250 SSTHAFFGFNGTAGVWRISAMNEAGGWKDRTTVEDMDLAVRAGLKGWKFVYLGDLMVKSELPSTFKAFR 318          
The following BLAST results are available for this feature:
BLAST of CF504087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLAA_ARATH1.028e-1954.69Probable mannan synthase 10 OS=Arabidopsis thalian... [more]
CSLA5_ORYSJ1.737e-1952.38Probable mannan synthase 5 OS=Oryza sativa subsp. ... [more]
CSLA6_ORYSJ1.847e-1845.31Probable mannan synthase 6 OS=Oryza sativa subsp. ... [more]
CSLA3_ORYSJ1.009e-1551.25Probable mannan synthase 3 OS=Oryza sativa subsp. ... [more]
CSLAB_ORYSJ1.317e-1552.17Probable mannan synthase 11 OS=Oryza sativa subsp.... [more]
CSLA3_ARATH1.721e-1555.07Probable mannan synthase 3 OS=Arabidopsis thaliana... [more]
CSLA1_ORYSJ5.006e-1549.28Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza ... [more]
CSLA2_ORYSJ8.540e-1546.38Probable mannan synthase 2 OS=Oryza sativa subsp. ... [more]
CSLA4_ORYSJ1.115e-1447.83Probable mannan synthase 4 OS=Oryza sativa subsp. ... [more]
CSLA9_ORYSJ1.457e-1449.28Probable mannan synthase 9 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-575 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504087 ID=CF504087; Name=CF504087; organism=Citrus sinensis; type=EST; length=273bp
GCTGACACGCCCCCAGAACATTAATTTGTCTTTTCATTTCGAGGTGGAAC
AACAGGTTAACGGAGTATTTCTAAGCTTTTTTGGTTTCAACGGAACAGCC
TGGCCGTCTGGAGAATTAAGGCCCTTGAAGAGTCTGGAGGATGGCTTGAA
AGAACAACCGTAGAGGACATGGACATAGCTGTTCGTGCTCATCTCAATGG
TTGGAAATTCATATTCCTTAATGATGTCAAGGGCCTTTGTGAAGTTCCTG
AGTCTTATGAAGCTTATAGAAAG
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