CF504087

Overview
NameCF504087
Unique NameCF504087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13073 contig Csv1_Contig13073:290..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLA2_ARATH (Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            S +  F+    +  +WRI A+ E+GGW +RTTVEDMD+AVRA L GWKF++L D++   E+P ++ A+R
Sbjct:  255 SSTHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQVKSELPSTFRAFR 323
[Close]
BLAST of CF504087 vs. ExPASy Swiss-Prot
Match: CSLAE_ARATH (Probable mannan synthase 14 OS=Arabidopsis thaliana GN=CSLA14 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   64 SISKLFWFQRNSLAVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKGLCEVPESYEAYR 270
            SI   F F   +  VWRIKAL E+ GW +RT VEDMD+AVRA+L G KF++++DVK   E+P S++AYR
Sbjct:  254 SILGFFGFN-GTAGVWRIKALNEAEGWKDRTIVEDMDLAVRAYLRGSKFVYVDDVKVKNELPSSFQAYR 321
The following BLAST results are available for this feature:
BLAST of CF504087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLA2_ARATH1.902e-1447.83Glucomannan 4-beta-mannosyltransferase 2 OS=Arabid... [more]
CSLAE_ARATH4.238e-1455.07Probable mannan synthase 14 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-575 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504087 ID=CF504087; Name=CF504087; organism=Citrus sinensis; type=EST; length=273bp
GCTGACACGCCCCCAGAACATTAATTTGTCTTTTCATTTCGAGGTGGAAC
AACAGGTTAACGGAGTATTTCTAAGCTTTTTTGGTTTCAACGGAACAGCC
TGGCCGTCTGGAGAATTAAGGCCCTTGAAGAGTCTGGAGGATGGCTTGAA
AGAACAACCGTAGAGGACATGGACATAGCTGTTCGTGCTCATCTCAATGG
TTGGAAATTCATATTCCTTAATGATGTCAAGGGCCTTTGTGAAGTTCCTG
AGTCTTATGAAGCTTATAGAAAG
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