CF504094

Overview
NameCF504094
Unique NameCF504094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.447e-30
Identity = 65/87 (74.71%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.654e-29
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            APS +RR +MS+P+S +LRQKYN RSMP+RKDDEVQVVRG +KG++ GKVVQVYR+K+V+HIERI REK NG+TV VGI+PSKV+I
Sbjct:   21 APSHMRRKIMSSPMSKELRQKYNCRSMPIRKDDEVQVVRGHFKGQQVGKVVQVYRKKFVVHIERIQREKANGATVYVGIHPSKVLI 106          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_SCHPO (60S ribosomal protein L26 OS=Schizosaccharomyces pombe GN=rpl26 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.554e-27
Identity = 55/86 (63.95%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APSSVRR+LMSAPLS +LR++Y +RS+PVR+DD++ V+RG+ KGREGK+  VYR+K+++ IER+TREK NG++  VGI+ SKVVIT
Sbjct:   21 APSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVIT 106          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_CAEEL (60S ribosomal protein L26 OS=Caenorhabditis elegans GN=rpl-26 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-25
Identity = 52/86 (60.47%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS  RR +MSAPL+ +LR K+ +R++P+R DDEV V+RG +KG  G+V++ YR+K+VIHI++ITREK NGSTV++GI+PSKV IT
Sbjct:   21 APSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAIT 106          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26B_YEAST (60S ribosomal protein L26-B OS=Saccharomyces cerevisiae GN=RPL26B PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 47/86 (54.65%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++PSK+VIT
Sbjct:   22 APSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26A_YEAST (60S ribosomal protein L26-A OS=Saccharomyces cerevisiae GN=RPL26A PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 47/86 (54.65%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++PSK+VIT
Sbjct:   22 APSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_DICDI (60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.713e-23
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            A S  RRI MSA LS DLR KYNVRS+P+RKDDEV+VV G  K  EGKVV  YR+K+VIHI+++T  K NG+T  +G++PS V++T
Sbjct:   21 ASSGERRIRMSAALSHDLRTKYNVRSLPIRKDDEVRVVCGDNKNHEGKVVACYRKKYVIHIDKLTVTKTNGNTAQIGVSPSNVILT 106          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRHO (50S ribosomal protein L24P OS=Pyrococcus horikoshii GN=rpl24p PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 44/85 (51.76%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  VR+ +MSAPLS +LR+KY VR++PVR  D+V+++RG +KG EGKVV+V  +++ I++E +T  KVNG+ V   I+PS V+I
Sbjct:   18 APLHVRQKMMSAPLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGTEVFYPIHPSNVMI 102          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRFU (50S ribosomal protein L24P OS=Pyrococcus furiosus GN=rpl24p PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  VR+ LMSAPLS +LR+KY VR++PVR  D+V+++RG YKG EGKVV+V  +++ I++E  T  K NG+ V   I+PS V+I
Sbjct:   18 APLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRKO (50S ribosomal protein L24P OS=Pyrococcus kodakaraensis GN=rpl24p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 42/85 (49.41%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +R  +MSAPLS +LR+KY VR++P+R  D+V+V+RG +KG EGKVV+V  R++ IH+E +T +K +G+ V   ++PS V+I
Sbjct:   18 APLHLRGKIMSAPLSKELREKYGVRNLPIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVEGVTHKKTDGTEVFYPLHPSNVMI 102          
The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL26_AILME1.447e-3074.7160S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]
RL26_LITLI4.654e-2972.0960S ribosomal protein L26 OS=Littorina littorea GN... [more]
RL26_SCHPO2.554e-2763.9560S ribosomal protein L26 OS=Schizosaccharomyces p... [more]
RL26_CAEEL4.077e-2560.4760S ribosomal protein L26 OS=Caenorhabditis elegan... [more]
RL26B_YEAST4.508e-2454.6560S ribosomal protein L26-B OS=Saccharomyces cerev... [more]
RL26A_YEAST4.508e-2454.6560S ribosomal protein L26-A OS=Saccharomyces cerev... [more]
RL26_DICDI1.713e-2360.4760S ribosomal protein L26 OS=Dictyostelium discoid... [more]
RL24_PYRHO3.696e-1851.7650S ribosomal protein L24P OS=Pyrococcus horikoshi... [more]
RL24_PYRFU3.696e-1852.9450S ribosomal protein L24P OS=Pyrococcus furiosus ... [more]
RL24_PYRKO1.835e-1749.4150S ribosomal protein L24P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTAT
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