CF504094

Overview
NameCF504094
Unique NameCF504094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_KORCO (50S ribosomal protein L24P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP   R  +MSAPLS +L+ KY + S+P+RK D V+V+RG Y+G EG+V+ V R+++ I ++ I R K +G+ V V I+PSKVVIT
Sbjct:   18 APIHHRGKIMSAPLSEELKSKYGINSIPIRKGDRVKVMRGDYRGTEGEVISVDRKRYRIAVKGIVRRKADGTEVPVPIHPSKVVIT 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRAB (50S ribosomal protein L24P OS=Pyrococcus abyssi GN=rpl24p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 40/85 (47.06%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +R+ +M+APLS +LR+KY +R++PVR  D+V+++RG +KG EGKVV+V  +++ I++E  T  K NG+ V   I+PS V+I
Sbjct:   18 APLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_AERPE (50S ribosomal protein L24P OS=Aeropyrum pernix GN=rpl24p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   R+ L+SA LS +LR+KY VRS+PVRK D+V+V+RG +KG EGKVV+V  R+  I+I+ +T  K +G+ V   I+PS V+I
Sbjct:   20 APLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMI 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.525e-15
Identity = 38/84 (45.24%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    4 PSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            P  +R  L +APLS +LR+KY V+ +PVRK D V+++RG +KG EGKVV++  R+  +++E + R+K + + V   I+PSKV+I
Sbjct:   20 PLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METTH (50S ribosomal protein L24P OS=Methanobacterium thermoautotrophicum GN=rpl24p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 37/85 (43.53%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   RR +MSA LS +LR++Y  RS+P+RK D+V+++RG ++G EGKV +V  +++ +++E  T +KV+G+TV   ++PS + I
Sbjct:   15 APLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRI 99          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METKA (50S ribosomal protein L24P OS=Methanopyrus kandleri GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   R+ LMSA L  +LR+K+N RS+PVR+ D V+++RG +KG EG+VV+V  ++  I++E  T E+ NG  V   I+PS V+I
Sbjct:   19 APLHKRQKLMSATLHPELRKKFNRRSLPVRRGDMVRIMRGDFKGHEGEVVEVDLKRLRIYVEGATIERANGEKVYYPIHPSNVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R   + APLS +L+QK  ++ + VRK D V +VRG++KG EGKV  V  +K  IH+E  T  K +G+ V   I+PSKVV+T
Sbjct:   20 APLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVT 105          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.524e-14
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R   M+APLS +LR+KY V+ +PVRK D V++VRG ++G EG V +V  +K  I+++  T E   G      I+PSKV+IT
Sbjct:   19 APLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIIT 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_HYPBU (50S ribosomal protein L24P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   R+ LM+APLS +LR++Y +RS+PVR  DEV ++RG +KG  GKVV+V  R+  I +E +T     G      I+PS V+I
Sbjct:   19 APLHKRQKLMAAPLSPELRKQYGIRSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVEGVTITNARGEPRYYPIHPSNVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.676e-13
Identity = 35/85 (41.18%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    4 PSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            P+ +R  L++A LS DL ++Y ++ + +RK D V+++RG+  G EGKVV+V R++  + IE +T++K +G+ V V ++ SKV+IT
Sbjct:   17 PNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIIT 101          
The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL24_KORCO1.835e-1750.0050S ribosomal protein L24P OS=Korarchaeum cryptofi... [more]
RL24_PYRAB1.189e-1647.0650S ribosomal protein L24P OS=Pyrococcus abyssi GN... [more]
RL24_AERPE4.519e-1651.7650S ribosomal protein L24P OS=Aeropyrum pernix GN=... [more]
RL24_STAMF6.525e-1545.2450S ribosomal protein L24P OS=Staphylothermus mari... [more]
RL24_METTH1.454e-1443.5350S ribosomal protein L24P OS=Methanobacterium the... [more]
RL24_METKA1.898e-1447.0650S ribosomal protein L24P OS=Methanopyrus kandler... [more]
RL24_THEPD2.479e-1446.5150S ribosomal protein L24P OS=Thermofilum pendens ... [more]
RL24_IGNH45.524e-1445.3550S ribosomal protein L24P OS=Ignicoccus hospitali... [more]
RL24_HYPBU1.607e-1345.8850S ribosomal protein L24P OS=Hyperthermus butylic... [more]
RL24_SULAC4.676e-1341.1850S ribosomal protein L24P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTAT
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