CF504094
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_KORCO (50S ribosomal protein L24P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl24p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17 Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258 AP R +MSAPLS +L+ KY + S+P+RK D V+V+RG Y+G EG+V+ V R+++ I ++ I R K +G+ V V I+PSKVVIT Sbjct: 18 APIHHRGKIMSAPLSEELKSKYGINSIPIRKGDRVKVMRGDYRGTEGEVISVDRKRYRIAVKGIVRRKADGTEVPVPIHPSKVVIT 103
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRAB (50S ribosomal protein L24P OS=Pyrococcus abyssi GN=rpl24p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16 Identity = 40/85 (47.06%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 AP +R+ +M+APLS +LR+KY +R++PVR D+V+++RG +KG EGKVV+V +++ I++E T K NG+ V I+PS V+I Sbjct: 18 APLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_AERPE (50S ribosomal protein L24P OS=Aeropyrum pernix GN=rpl24p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16 Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 AP R+ L+SA LS +LR+KY VRS+PVRK D+V+V+RG +KG EGKVV+V R+ I+I+ +T K +G+ V I+PS V+I Sbjct: 20 APLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMI 104
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.525e-15 Identity = 38/84 (45.24%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 4 PSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 P +R L +APLS +LR+KY V+ +PVRK D V+++RG +KG EGKVV++ R+ +++E + R+K + + V I+PSKV+I Sbjct: 20 PLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMI 103
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METTH (50S ribosomal protein L24P OS=Methanobacterium thermoautotrophicum GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14 Identity = 37/85 (43.53%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 AP RR +MSA LS +LR++Y RS+P+RK D+V+++RG ++G EGKV +V +++ +++E T +KV+G+TV ++PS + I Sbjct: 15 APLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRI 99
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METKA (50S ribosomal protein L24P OS=Methanopyrus kandleri GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 AP R+ LMSA L +LR+K+N RS+PVR+ D V+++RG +KG EG+VV+V ++ I++E T E+ NG V I+PS V+I Sbjct: 19 APLHKRQKLMSATLHPELRKKFNRRSLPVRRGDMVRIMRGDFKGHEGEVVEVDLKRLRIYVEGATIERANGEKVYYPIHPSNVMI 103
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.479e-14 Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258 AP +R + APLS +L+QK ++ + VRK D V +VRG++KG EGKV V +K IH+E T K +G+ V I+PSKVV+T Sbjct: 20 APLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVT 105
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.524e-14 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258 AP +R M+APLS +LR+KY V+ +PVRK D V++VRG ++G EG V +V +K I+++ T E G I+PSKV+IT Sbjct: 19 APLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIIT 104
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_HYPBU (50S ribosomal protein L24P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255 AP R+ LM+APLS +LR++Y +RS+PVR DEV ++RG +KG GKVV+V R+ I +E +T G I+PS V+I Sbjct: 19 APLHKRQKLMAAPLSPELRKQYGIRSLPVRVGDEVVIMRGDFKGHRGKVVRVDLRRMRIFVEGVTITNARGEPRYYPIHPSNVMI 103
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 4.676e-13 Identity = 35/85 (41.18%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 4 PSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258 P+ +R L++A LS DL ++Y ++ + +RK D V+++RG+ G EGKVV+V R++ + IE +T++K +G+ V V ++ SKV+IT Sbjct: 17 PNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIIT 101 The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bpback to top |