CF504094

Overview
NameCF504094
Unique NameCF504094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +R  L +A LS DL++K  V+ +PVR+ D V ++RG +KG  GKVV+V  +K  I++E  TR    G TV   I+PSKV+I
Sbjct:   19 APLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METS3 (50S ribosomal protein L24P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP+  R   MSA LS DLR     RS+P+RK D+VQV+RG +KG EG V+ V    + I IE +T  K +G+ V + ++PS V+I
Sbjct:   15 APAHARGKHMSATLSKDLRADIGKRSLPIRKGDKVQVLRGDFKGHEGAVLGVDYGSYKITIEEVTLSKPDGTAVFLPVDPSNVMI 99          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.321e-12
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +RR L++A LS +L++K  V+ +PVR+ D V ++RG +KG  GKVV+V  ++  I +E  TR    G TV   I+PSKV+I
Sbjct:   19 APLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRAR (50S ribosomal protein L24P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.321e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +R  L +A LS +L +K  V+ +PVR+ D V ++RG +KG  GKVV+V  +K  I++E  TR    G TV   I+PSKV+I
Sbjct:   19 APLHLRHKLFNAKLSPELEKKLGVKRLPVRRGDTVMILRGDFKGVTGKVVRVDLKKVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_PYRAE (50S ribosomal protein L24P OS=Pyrobaculum aerophilum GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +RR L +A LS +L +K  V+ +PVR+ D V ++RG +KG  GKVV+V  ++  I++E  TR    G TV   I+PSKV+I
Sbjct:   19 APLHLRRKLFNAKLSPELAKKLGVKRLPVRRGDTVLILRGDFKGVTGKVVKVDLKRVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_META3 (50S ribosomal protein L24P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   R  LMSA LS DL++KYN  ++PV+  D V+++RGT+KG EG+V +V  + + I++E     K +G+     I+PS V+I
Sbjct:   19 APLHARNKLMSAMLSKDLKEKYNKNALPVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVEGAVNRKQDGNESLYPIHPSNVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_SULSO (50S ribosomal protein L24P OS=Sulfolobus solfataricus GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    4 PSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            P   R+ L+ A +S D+  +Y ++ + VRK D V+V+RG   G+EGKVV+V  +   + IE ITR+KV+G+ V V I+ SKV+IT
Sbjct:   17 PLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMIT 101          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.170e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP   RR L++APLS DL+++  +R +PVR  D V ++RG +KG  GKV +V  ++  I+++  + +K +G  V   I+PSKVVI
Sbjct:   20 APWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVI 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.170e-12
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   16 RRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            R  L+ A LS DLR+KY  R++ VRK D+V+++RG + G EG+V++V  ++  I ++ +T  K +G+ V V I+PS V+IT
Sbjct:   25 RHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMIT 105          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METM7 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R  +M+A LS +L++K+N  S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+PS V+IT
Sbjct:   19 APLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104          
The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL24_PYRIL6.107e-1345.8850S ribosomal protein L24P OS=Pyrobaculum islandic... [more]
RL24_METS31.361e-1245.8850S ribosomal protein L24P OS=Methanobrevibacter s... [more]
RL24_PYRCJ2.321e-1244.7150S ribosomal protein L24P OS=Pyrobaculum calidifo... [more]
RL24_PYRAR2.321e-1244.7150S ribosomal protein L24P OS=Pyrobaculum arsenati... [more]
RL24_PYRAE3.031e-1244.7150S ribosomal protein L24P OS=Pyrobaculum aerophil... [more]
RL24_META33.031e-1242.3550S ribosomal protein L24P OS=Methanococcus aeolic... [more]
RL24_SULSO3.958e-1244.7150S ribosomal protein L24P OS=Sulfolobus solfatari... [more]
RL24_CALMQ5.170e-1242.3550S ribosomal protein L24P OS=Caldivirga maquiling... [more]
RL24_ARCFU5.170e-1243.2150S ribosomal protein L24P OS=Archaeoglobus fulgid... [more]
RL24_METM78.819e-1240.7050S ribosomal protein L24P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTAT
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