CF504094

Overview
NameCF504094
Unique NameCF504094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METM5 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R  +M+A LS +L++K+N  S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+PS V+IT
Sbjct:   19 APLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METJA (50S ribosomal protein L24P OS=Methanocaldococcus jannaschii GN=rpl24p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 34/85 (40.00%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 255
            AP  +RR +MSA LS +L++K    ++PVRK D V+++RG +KG EG+V++V  +++ I++E    ++ +G  V   I+PS V+I
Sbjct:   19 APLHLRRKVMSAMLSKELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVEGANNKRQDGREVPYPIHPSNVMI 103          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP   R   MS  LS DL++++N RS PVRK D V++VRG ++G EGKV  V  + + + ++  + +K +GS +   I+PS +V+T
Sbjct:   15 APLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLT 100          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METMP (50S ribosomal protein L24P OS=Methanococcus maripaludis GN=rpl24p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R  +MSA L+ +L++KY   S+PV+K D V+V+RG +KG EG+V +V    + I +E +  +K +G+     I+PS V+IT
Sbjct:   19 APLHLRNSVMSAMLAKELKEKYAKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGNETAYPIHPSNVMIT 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METVS (50S ribosomal protein L24P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R  +MSA LS  L++KY   ++PV+K D V+V+RG++KG EG+V +V    + I +E +  +K +G      I+PS V+IT
Sbjct:   19 APLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METVA (50S ribosomal protein L24P OS=Methanococcus vannielii GN=rpl24p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            AP  +R  +MSA LS  L++KY   ++PV+K D V+V+RG++KG EG+V +V    + I +E +  +K +G      I+PS V+IT
Sbjct:   19 APLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_METS5 (50S ribosomal protein L24P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   34 APLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APLS +L ++Y ++ + +RKDD V+V+RG   G EGKV QV+     I IE +TR+K +G+ V + I+ SKV IT
Sbjct:    8 APLSDELAKEYGMKRIGIRKDDTVRVMRGDNYGFEGKVTQVFPESGRIAIEGLTRKKADGTPVYIKIHASKVEIT 82          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL24_THEVO (50S ribosomal protein L24P OS=Thermoplasma volcanium GN=rpl24p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   28 MSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            ++  LS DLR+KY +RS P+ K D V+VV G  KG  GKV +V     ++ +E IT  K++G     GI+P K+ IT
Sbjct:    5 LNVALSKDLRKKYGIRSFPIVKGDVVKVVSGARKGEGGKVAEVDHHSGLVIVEGITIAKIDGKQKGFGISPEKLQIT 81          
The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL24_METM58.819e-1240.7050S ribosomal protein L24P OS=Methanococcus maripa... [more]
RL24_METJA8.819e-1240.0050S ribosomal protein L24P OS=Methanocaldococcus j... [more]
RL24_METST1.504e-1140.7050S ribosomal protein L24P OS=Methanosphaera stadt... [more]
RL24_METMP2.566e-1140.7050S ribosomal protein L24P OS=Methanococcus maripa... [more]
RL24_METVS3.351e-1140.7050S ribosomal protein L24P OS=Methanococcus vannie... [more]
RL24_METVA3.351e-1140.7050S ribosomal protein L24P OS=Methanococcus vannie... [more]
RL24_METS53.351e-1146.6750S ribosomal protein L24P OS=Metallosphaera sedul... [more]
RL24_THEVO7.465e-1142.8650S ribosomal protein L24P OS=Thermoplasma volcani... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTAT
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