CF504095

Overview
NameCF504095
Unique NameCF504095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:344..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++ MRKREIAAF  QT HETTGGW DAP G YAWGYCY+++++                 QY GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK
Sbjct:  136 DDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFK 238          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK
Sbjct:  128 RKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFK 227          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            N   RKRE+AAF  QT HETTGGW  AP G ++WGYC+ ++ +P S            PG +YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK
Sbjct:  136 NTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFK 239          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK
Sbjct:   76 RKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFK 175          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++   +S           P + Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK
Sbjct:  133 DDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFK 236          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            N+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F+
Sbjct:   73 NDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP-------------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFR 162          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG +Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK
Sbjct:   56 RNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFK 155          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK
Sbjct:   76 QKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFK 175          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.111e-25
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++  +K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK
Sbjct:  127 DDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFK 229          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.492e-24
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:   18 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            KRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +  +                +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK
Sbjct:  128 KREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFK 227          
The following BLAST results are available for this feature:
BLAST of CF504095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI6_POPTR1.492e-2754.37Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_HORVU1.492e-2758.0026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_ORYSJ1.948e-2754.81Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE3.323e-2757.00Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI9_ORYSJ3.323e-2752.88Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ5.669e-2751.46Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC3.674e-2655.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_HORVU1.824e-2555.0026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIX_PEA3.111e-2550.49Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_ORYSJ4.492e-2452.00Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-583 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504095 ID=CF504095; Name=CF504095; organism=Citrus sinensis; type=EST; length=313bp
GAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACT
GGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACT
GTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTT
GGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTAC
TATCATTCAAGTC
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