CF504213

Overview
NameCF504213
Unique NameCF504213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/113 (54.87%), Postives = 86/113 (76.11%), Query Frame = -1
Query:  214 LVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS-----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 537
            LVRELEKKF G+D++++A RRI+  P++GS  +      PRSRTLTAVHDA L+++VYPAE+VG+R+R +LDG K+ K+ LD   + N  +K+  F+ VYRKLTGKDV F++P
Sbjct:   78 LVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.281e-30
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = -1
Query:  211 SRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV--QSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 543
            +RL RELEKKF+ + V+ IA RRI+  P + S V  + PRSRTLTAVH+A+LED+V+P EI+GKR R   DG K IK+FLD ++ N  +YKL SFS VY KLTGK+V F++P+
Sbjct:   77 ARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPV 189          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 63/112 (56.25%), Postives = 90/112 (80.36%), Query Frame = -1
Query:  214 LVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 537
            LVRELEKKFSGK VV+IA R+I+  P + +      + PRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   77 LVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 63/113 (55.75%), Postives = 88/113 (77.88%), Query Frame = -1
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV I  R+I+  P   + V +    PRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   74 RLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 63/113 (55.75%), Postives = 88/113 (77.88%), Query Frame = -1
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV I  R+I+  P   + V +    PRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   74 RLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 62/112 (55.36%), Postives = 89/112 (79.46%), Query Frame = -1
Query:  214 LVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 537
            LVRELEKKFSGK VV+I  R+I+  P + +      + PRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   77 LVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  214 SRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 543
            ++L RELEKKF  + V+ +A RRI+  P + S    + PRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   75 TKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  214 SRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 543
            ++L RELEKKF  + V+ +A RRI+  P + S    + PRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   75 TKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = -1
Query:  217 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS---PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 540
            +L  E+EKK  GK V+ IA RRI+R P   + ++    P SRT+ AVHDA+L+D+V+P  IVG+R+RYRLDGSK+ KI+LD KE  +   K++SFS VY KLTGK+VVF++
Sbjct:   76 KLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVVFEF 186          
The following BLAST results are available for this feature:
BLAST of CF504213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_CAEEL9.807e-3154.8740S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7_SCHPO1.281e-3057.5240S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_DROME2.853e-3056.2540S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_SPOFR6.357e-3055.7540S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_MANSE6.357e-3055.7540S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROYA8.302e-3055.3640S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7A_YEAST1.199e-2856.2540S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]
RS7B_YEAST1.566e-2856.2540S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7_DICDI1.122e-2654.0540S ribosomal protein S7 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-702 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504213 ID=CF504213; Name=CF504213; organism=Citrus sinensis; type=EST; length=543bp
AGACATGATGTTTCTCAGCTCAACAATTTCACAAAATGAAGAAACAAAAA
GAAATTCATAAAGCTTCATCTGTCCTATGCAAAATGATGTCATACCAAAT
TTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAATTATAGTG
CAACAAAATAAACAGTGACAAACACAAATGATCGTCTGCAACAACTCTTC
AGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGGTAAGCTTT
CTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTGTTCCTCTC
CTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAGACGGTATC
TGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTTCAAGCATG
GCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGGCTCTGAACAGCAGA
GCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAGTACCACAT
CCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAGA
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