CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A2A_RAT9.874e-2963.11Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2... [more]
H2A2A_MOUSE9.874e-2963.11Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1... [more]
H2A2A_HUMAN9.874e-2963.11Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3... [more]
H2A1_RAT9.874e-2963.11Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A1_MOUSE9.874e-2963.11Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1K_MOUSE9.874e-2963.11Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1H_MOUSE9.874e-2963.11Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE9.874e-2963.11Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]
H2A1D_HUMAN9.874e-2963.11Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A1C_RAT9.874e-2963.11Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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