CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 8.359e-28
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGL FPVGR+ R L++G Y+QR+G+GAP                  GNAARDNKK RIIPRH+ LA+RND+EL KLL  VTIA GGVLPNI+  LLPK
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS KAGL FPVGR+ R L++G Y+QR+G+GAP                  GNAARDNKK+RIIPRH+ LA+RND+EL KLL  VTIA GGVLPNI+  LLPK
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS KAGL FPVGR+ R L++G Y+QR+G+GAP                  GNAARDNKK+RIIPRH+ LA+RND+EL KLL  VTIA GGVLPNI+  LLPK
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.176e-27
Identity = 63/102 (61.76%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS KAGLQFPVGRI R LKKG Y+QR+G+GAP                  GNAARDNKK+RI+PRH+ LAVRNDEEL KLL  V I+ GGVLP+I   LLP
Sbjct:   17 SRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLP 118          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.176e-27
Identity = 62/102 (60.78%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS KAGLQFPVGR+ R LKKG Y+QRVG GAP                  GNAARDNKK RI+PRH+ LA+RNDEEL KLL  V I+ GGV+P+I P LLP
Sbjct:   22 SRSSKAGLQFPVGRVHRLLKKGNYAQRVGAGAPVYMAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLP 123          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 61/103 (59.22%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KA L FPVGR+ R L+KG Y+QR+G GAP                  GNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLP+
Sbjct:   20 SRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPR 122          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.076e-27
Identity = 63/103 (61.17%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGL FPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGV+P I+  LLPK
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAG+ FPVGR+ RY+KKG    R+G GAP                  GNAARDNKK R+ PRH+LLAV NDEEL +LL GVTIA GGVLPNI+P LL K
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAK 116          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAG+ FPVGR+ RY+KKG    R+G GAP                  GNAARDNKK R+ PRH+LLAV NDEEL +LL GVTIA GGVLPNI+P LL K
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAK 116          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AY_HUMAN (Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAG+ FPVGR+ RY+KKG    R+G GAP                  GNAARDNKK R+ PRH+LLAV NDEEL +LL GVTIA GGVLPNI+P LL K
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAK 116          
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_YEAST8.359e-2860.19Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A2_CANGA1.426e-2759.22Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_CANGA1.426e-2759.22Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A_CRYNE3.176e-2761.76Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A_AGABI3.176e-2760.78Histone H2A OS=Agaricus bisporus PE=2 SV=3[more]
H2A_YARLI5.418e-2759.22Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A_COCIM7.076e-2761.17Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2AY_RAT3.512e-2659.22Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]
H2AY_MOUSE3.512e-2659.22Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]
H2AY_HUMAN3.512e-2659.22Core histone macro-H2A.1 OS=Homo sapiens GN=H2AFY ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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