CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKK-GRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            S S KAGLQFP GRI R+L+   R   R+G  A                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP+IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPHINRALLLK 127          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.384e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   16 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGK 118          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.384e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 SRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGK 121          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.384e-14
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK+   S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   21 SRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIK-ATIAGGGVIPHIHRYLMNK 123          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.808e-14
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS KAGLQFPVGRI R+L+ K   + R+G  A                   GNAA+D +  RI PRH+ LA+R DEEL  LL   TIA GGVLP+I+  L+ K
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRITPRHLQLAIRGDEEL-DLLIRATIAGGGVLPHIHKSLVAK 126          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.808e-14
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R LK+   +  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   31 SRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 133          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.808e-14
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ--RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AG+QFPVGRI R LK GR S   RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   33 SRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGK 121          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGK 121          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGRI R+LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGK 121          
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AZ_PHANO8.115e-1548.08Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AV_STRPU1.384e-1447.12Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]
H2AV_DROME1.384e-1447.12Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_CAEEL1.384e-1447.12Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AZ_CRYNE1.808e-1447.12Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]
H2AV3_ORYSJ1.808e-1447.12Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.808e-1448.57Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AZ_SHEEP2.361e-1447.12Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT2.361e-1447.12Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]
H2AZ_PONAB2.361e-1447.12Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
back to top