CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            S+S K GL FPVGR+G  +++G+Y++R+G +GA                     AA+  KK  R+ PR V+LA R+D+++G LL  VT++H GV+PNI+  +  K
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGRI R LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGK 121          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS +AGLQFPVGRI R LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ K
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGK 121          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 3
Query:  195 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 473
            RS KA LQF V R+   LKKGRY +R+G  AP                   N    +K+  I PRH++LAVRND E+ KL  GVTI+  GV+P
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVP 110          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 494
            ++S +AGLQFPVGRI R+LK    +  R+G  A                   GNA++D +  RI PRH+ LA+R DEEL  ++   TIA GGVLP+I+  L+
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLI 125          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 473
            SRS +AG+ FPV R+ R L++GR++ RV + AP                   N    +KK RI P+H+  AV ND EL  L   VTIA+GGVLP
Sbjct:   36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            S+S K GL FPVGR+G  +++G+Y++R+G +GA                     AA+  KK  R+ PR V+LA R+D+++G LL  VT++H GV+P+++  +  K
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKK 120          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 494
            SRS +A L FPV RI + +++GR+++R  + AP                     A    K RI P+H+ L++  D EL  LL  VTIA+GGV   I+P+LL
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILL 232          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  345 GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 479
            GNAARDNKK+RIIPRHV LAV     L KLL  VTIA GGVLPNI
Sbjct:   23 GNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67          
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_LEIIN1.172e-1339.05Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]
H2AZL_XENTR3.410e-1346.15Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA3.410e-1346.15Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2A2_LILLO4.453e-1344.09Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2AZ_USTMA5.816e-1342.16Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AX_DICDI7.596e-1342.55Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2A2_LEIIN7.596e-1337.14Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2AV1_DICDI4.168e-1137.62Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A_OLILU7.109e-1175.56Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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