CF504219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13 Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 S+S K GL FPVGR+G +++G+Y++R+G +GA AA+ KK R+ PR V+LA R+D+++G LL VT++H GV+PNI+ + K Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKK 120
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13 Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGRI R LK S RVG A GNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ K Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGK 121
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13 Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGRI R LK S RVG A GNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ K Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGK 121
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13 Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 3 Query: 195 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 473 RS KA LQF V R+ LKKGRY +R+G AP N +K+ I PRH++LAVRND E+ KL GVTI+ GV+P Sbjct: 18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVP 110
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13 Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 494 ++S +AGLQFPVGRI R+LK + R+G A GNA++D + RI PRH+ LA+R DEEL ++ TIA GGVLP+I+ L+ Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLI 125
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13 Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 473 SRS +AG+ FPV R+ R L++GR++ RV + AP N +KK RI P+H+ AV ND EL L VTIA+GGVLP Sbjct: 36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13 Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 S+S K GL FPVGR+G +++G+Y++R+G +GA AA+ KK R+ PR V+LA R+D+++G LL VT++H GV+P+++ + K Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKK 120
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11 Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 494 SRS +A L FPV RI + +++GR+++R + AP A K RI P+H+ L++ D EL LL VTIA+GGV I+P+LL Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILL 232
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11 Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 3 Query: 345 GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 479 GNAARDNKK+RIIPRHV LAV L KLL VTIA GGVLPNI Sbjct: 23 GNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67 The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bpback to top |