CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPK
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 4.432e-29
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 4.432e-29
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 4.432e-29
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.789e-29
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPK
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.789e-29
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPK
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 7.560e-29
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPK
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPK 120
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPK
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_ORYSI3.394e-2963.11Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A3_RAT4.432e-2964.08Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE4.432e-2964.08Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN4.432e-2964.08Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A2_ORYSJ5.789e-2962.14Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI5.789e-2962.14Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT7.560e-2962.14Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A_CAIMO9.874e-2963.11Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_RAT9.874e-2963.11Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE9.874e-2963.11Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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