CF504242

Overview
NameCF504242
Unique NameCF504242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.279e-23
Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 2
Query:   83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469
            A W++FE   Y + TL+  + +L L++LFLWS +++ +N+  P +P   + E    E +  LR  +N+ L V  +IA  RD + +  V   L+LLS++G+  +F TL +   +++ TVP  YE+YED I
Sbjct:   45 ASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          

HSP 2 Score: 31.187 bits (69), Expect = 9.279e-23
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGVL 69
            +LG G  AD+ LWR K +S G++
Sbjct:   18 ILGGGIVADVMLWRKKNVSVGIV 40          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.045e-22
Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = 2
Query:   71 VEPPAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            +     W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG   N +TL YI  +L  + P++YEKY+D ID
Sbjct:   39 ISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          

HSP 2 Score: 26.9498 bits (58), Expect = 2.045e-22
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:    4 LGAGKPADIFLWRNK 48
            LGAG  AD+ LWRN+
Sbjct:   17 LGAGSVADLLLWRNR 31          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.655e-22
Identity = 49/133 (36.84%), Postives = 80/133 (60.15%), Query Frame = 2
Query:   86 MWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469
            +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LSVVGN+ + +TL YIVFV L T+P++YE+YE+++
Sbjct:   53 IWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          

HSP 2 Score: 31.187 bits (69), Expect = 2.655e-22
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1
Query:    4 LGAGKPADIFLWRNKKISAGVLG 72
            LG G+ ADI  W+NKK S  +LG
Sbjct:   26 LGGGRFADIMFWKNKKESGTILG 48          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.799e-16
Identity = 37/128 (28.91%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472
            W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G++ +  TL YI  +L  T+P +Y KY+ K+D
Sbjct:   64 WLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.978e-14
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   89 WVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475
            W L E +E  L+ L+C I +L + +LFLW+     F  + PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G++ + +T+ YI  V   T+PV+Y ++++ IDS
Sbjct:   36 WFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDS 161          

HSP 2 Score: 23.8682 bits (50), Expect = 1.978e-14
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 1
Query:    1 VLGAGKPADIFLWRNKKISAGV 66
            +LG G  AD+ LW++ KI++G+
Sbjct:    7 ILGDGAVADLCLWKD-KINSGI 27          
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 36/127 (28.35%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469
            W+L     +  IT+V  I I  ++++FLW +    ++K  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN  +F T  +I  V+  TVP ++E+Y D+I
Sbjct:   39 WILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQI 165          
The following BLAST results are available for this feature:
BLAST of CF504242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLL_ARATH9.279e-2335.66Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.045e-2235.82Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH2.655e-2236.84Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH3.799e-1628.91Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.978e-1432.31Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH1.951e-1228.35Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-731 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504242 ID=CF504242; Name=CF504242; organism=Citrus sinensis; type=EST; length=476bp
GTCCTCGGAGCTGGAAAACCTGCTGATATTTTCCTATGGAGGAACAAGAA
AATATCTGCTGGTGTGCTAGGTGGAGCCACCTGCAATGTGGGTTCTCTTT
GAGTTGCTGGAATACCATTTAATCACTTTGGTCTGCCATATATCGATTCT
CTCTCTGGCTGTTCTCTTCCTGTGGTCCAATGCATCCACATTTATCAACA
AATCACCGCCAGAGATTCCAGTTGTTACACTTCCTGAGAAGTTTGTCCTT
GAATTCGCCTCTGCCTTGAGGTATGAAATCAACCGAGCCTTGGCTGTCCT
GCGGGAAATTGCATCTGGAAGGGACTTGAAGAAGTTTCTTGGTGTCATTG
CTGGCTTGTGGCTTTTGTCTGTTGTCGGTAATTGGTGCAACTTCGTGACA
TTATTCTACATTGTATTTGTTTTGCTACACACCGTGCCCGTGATTTATGA
GAAGTACGAGGACAAGATTGATTCAT
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