CF504242
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 9.279e-23 Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 2 Query: 83 AMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469 A W++FE Y + TL+ + +L L++LFLWS +++ +N+ P +P + E E + LR +N+ L V +IA RD + + V L+LLS++G+ +F TL + +++ TVP YE+YED I Sbjct: 45 ASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173 HSP 2 Score: 31.187 bits (69), Expect = 9.279e-23 Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGVL 69 +LG G AD+ LWR K +S G++ Sbjct: 18 ILGGGIVADVMLWRKKNVSVGIV 40
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.045e-22 Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 71 VEPPAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 + W LFE Y+L++ V ++ +L +A+ FLW+ ++T +N+ P +P + +PE+F + A LR IN L++ +I R+ + L V LW +S VG N +TL YI +L + P++YEKY+D ID Sbjct: 39 ISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172 HSP 2 Score: 26.9498 bits (58), Expect = 2.045e-22 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 4 LGAGKPADIFLWRNK 48 LGAG AD+ LWRN+ Sbjct: 17 LGAGSVADLLLWRNR 31
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 2.655e-22 Identity = 49/133 (36.84%), Postives = 80/133 (60.15%), Query Frame = 2 Query: 86 MWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469 +W LFE++EY IT +C I +L + + +WS +S I PP I + + E +F+ +IN + L +I+SG+D + + LW+LSVVGN+ + +TL YIVFV L T+P++YE+YE+++ Sbjct: 53 IWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178 HSP 2 Score: 31.187 bits (69), Expect = 2.655e-22 Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 4 LGAGKPADIFLWRNKKISAGVLG 72 LG G+ ADI W+NKK S +LG Sbjct: 26 LGGGRFADIMFWKNKKESGTILG 48
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.799e-16 Identity = 37/128 (28.91%), Postives = 71/128 (55.47%), Query Frame = 2 Query: 89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 472 W++FE +++ + ++ + + F+ + S F N+ +P + L E+ V A++ R ++N L + ++ G D + F V+ LWLLS +G++ + TL YI +L T+P +Y KY+ K+D Sbjct: 64 WLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.978e-14 Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 89 WVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 475 W L E +E L+ L+C I +L + +LFLW+ F + PP + P+ + AL + L +L EIA G+D K FL I + ++ +G++ + +T+ YI V T+PV+Y ++++ IDS Sbjct: 36 WFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDS 161 HSP 2 Score: 23.8682 bits (50), Expect = 1.978e-14 Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 1 VLGAGKPADIFLWRNKKISAGV 66 +LG G AD+ LW++ KI++G+ Sbjct: 7 ILGDGAVADLCLWKD-KINSGI 27
BLAST of CF504242 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12 Identity = 36/127 (28.35%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 89 WVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 469 W+L + IT+V I I ++++FLW + ++K PE+ + + E+FV+E + R + + + + + + F + G W+LS +GN +F T +I V+ TVP ++E+Y D+I Sbjct: 39 WILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQI 165 The following BLAST results are available for this feature:
BLAST of CF504242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504242 ID=CF504242; Name=CF504242; organism=Citrus sinensis; type=EST; length=476bpback to top |