CF504246

Overview
NameCF504246
Unique NameCF504246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA_HUMAN (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  430 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG
Sbjct:  252 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRG 313          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA_BOVIN (Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  430 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG
Sbjct:  246 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRG 307          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA_DICDI (Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  445 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            + VEEP++VNAKQY+ IL+RR +RAK ESENK+ K+RK Y HESRH HA++R RG
Sbjct:  225 EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRG 279          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYAA_ARATH (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  430 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA++R RG
Sbjct:  124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRG 181          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: HAP2_KLULA (Transcriptional activator HAP2 OS=Kluyveromyces lactis GN=HAP2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  439 PTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            P++ +E+P +VNAKQY+ IL+RR +RAK E   K+ + R+PYLHESRH HA++R RG
Sbjct:  179 PSEPLEQPFYVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRG 235          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: NFYA2_ARATH (Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  430 VPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAES--ENKVLKS--RKPYLHESRHLHALKRARG 609
            +PL  +  +  ++VN+KQYHGI+RRRQSRAKA +  + K L S  RKPY+H SRHLHAL+R RG
Sbjct:  127 LPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRG 190          
BLAST of CF504246 vs. ExPASy Swiss-Prot
Match: HAP2_YEAST (Transcriptional activator HAP2 OS=Saccharomyces cerevisiae GN=HAP2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  436 LPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARG 609
            L T   E+P +VNAKQY+ IL+RR +RAK E + ++ + RKPYLHESRH HA++R RG
Sbjct:  152 LGTAIAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRG 209          
The following BLAST results are available for this feature:
BLAST of CF504246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFYA_HUMAN1.271e-1461.29Nuclear transcription factor Y subunit alpha OS=Ho... [more]
NFYA_BOVIN1.271e-1461.29Nuclear transcription factor Y subunit alpha OS=Bo... [more]
NFYA_DICDI3.699e-1465.45Nuclear transcription factor Y subunit alpha OS=Di... [more]
NFYAA_ARATH2.398e-1359.02Nuclear transcription factor Y subunit A-10 OS=Ara... [more]
HAP2_KLULA2.398e-1356.14Transcriptional activator HAP2 OS=Kluyveromyces la... [more]
NFYA2_ARATH5.342e-1357.81Nuclear transcription factor Y subunit A-2 OS=Arab... [more]
HAP2_YEAST9.112e-1356.90Transcriptional activator HAP2 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-735 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504246 ID=CF504246; Name=CF504246; organism=Citrus sinensis; type=EST; length=610bp
TTATAATTTCACTTTCACCTGCAGAGCAGCAGAGGAGAGCCAGAAACAGC
CTGCTATAGAACACAGTGCCTAGTTTCTCTATAAGATTTGAGTTGCAGAT
TCTATATGCGTGACGGCCTCATGACTTCCTCTGTGCATGATATGTCCGAT
AACAGTGACGCTGATGAGCAGCGGAAGCATCCAGAATCCCAGTTACAGTC
CTCAACACCTGCAATGGGAATGTCTCATCCAAGCATCACAACTCCCAATG
TTCAATATGCAACGCATCAAGTCGGGGCAGGCCATGCTATGGCACCAGCA
GCTTACCCCTATCCAGATCCGTACTACAGAAGCATATTTGCTCCCTATGA
TGCACAACCATATCCTCCACAGCCATATGGTGGACAACCAATGGTCCATC
TTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCAACAGATGCA
GTTGAGGAGCCCGTGTTTGTCAATGCCAAACAATATCATGGCATCTTGCG
ACGACGACAATCTCGTGCAAAAGCTGAATCTGAAAACAAAGTTTTAAAGT
CTCGAAAGCCATACTTGCATGAATCTCGACATCTGCATGCATTAAAAAGA
GCTAGGGGAT
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