CF504264

Overview
NameCF504264
Unique NameCF504264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.639e-54
Identity = 104/156 (66.67%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKY+TPKYR +VRF+N+DI  Q+  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEPAD     FR  LDVGL+KT+TG
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDITCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 3.446e-54
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 3.446e-54
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 4.501e-54
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 5.878e-54
Identity = 103/156 (66.03%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 5.878e-54
Identity = 103/156 (66.03%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 5.878e-54
Identity = 103/156 (66.03%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.003e-53
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 2.917e-53
Identity = 102/156 (65.38%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.917e-53
Identity = 103/156 (66.03%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QVK++RRREGKTDY AR RL  QDKNKYNTPKYR +VR +NKDI  QI  A I GD V+ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D  Y G  E TGE+++VEP D     FR  LDVGL +TTTG
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTG 156          
The following BLAST results are available for this feature:
BLAST of CF504264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL5_TOXCI2.639e-5466.6760S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_HUMAN3.446e-5466.6760S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_BOVIN3.446e-5466.6760S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_CHICK4.501e-5466.0360S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_HELAN5.878e-5466.0360S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5B_XENLA5.878e-5466.0360S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA5.878e-5466.0360S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_MACFA1.003e-5366.0360S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_RAT2.917e-5365.3860S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_DROME2.917e-5366.0360S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-753 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504264 ID=CF504264; Name=CF504264; organism=Citrus sinensis; type=EST; length=475bp
TTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAG
CGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAG
AGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCA
AGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATA
GTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCA
TGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAG
CTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAA
ATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTC
TGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTG
GGCTCATCAAAACAACAACTGGAAA
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