CF504264

Overview
NameCF504264
Unique NameCF504264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 5.149e-50
Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTG 473
            MAFVKA K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E  ++ RRPF+ +LDVG++ TT G
Sbjct:    1 MAFVKAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.268e-48
Identity = 96/154 (62.34%), Postives = 114/154 (74.03%), Query Frame = 3
Query:   15 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTG 473
            FV   K+KAYFKR+Q K+KRRREGKTDY AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG
Sbjct:   13 FVAVLKNKAYFKRYQPKFKRRREGKTDYFARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTG 166          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 4.820e-48
Identity = 99/157 (63.06%), Postives = 116/157 (73.89%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA--DTRRPFRALLDVGLIKTTTG 473
            MAF K  KS AY  RFQ  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE Y +  A  D  RPF+  LD+GL +TTTG
Sbjct:    1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE-YELTEAVEDGPRPFKVFLDIGLQRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 6.514e-45
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 380
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.229e-43
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTG 473
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.229e-43
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTG 473
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 3
Query:   39 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 341
            A+  R+++ ++RRREGKTDYRAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK 95          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.379e-15
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 341
            R+ V ++RRREG+T+Y AR RL+   K        R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK 95          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.553e-14
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   15 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 155
            FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 341
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK 95          
The following BLAST results are available for this feature:
BLAST of CF504264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL5_EIMTE5.149e-5061.5460S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_OIKDI1.268e-4862.3460S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST4.820e-4863.0660S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_PIG6.514e-4570.1660S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL5B_SCHPO1.229e-4358.3360S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO1.229e-4358.3360S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL18_METTH2.414e-1542.5750S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METHJ5.379e-1547.4250S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL5_RABIT4.553e-1474.4760S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]
RL18_KORCO7.767e-1445.3650S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-753 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504264 ID=CF504264; Name=CF504264; organism=Citrus sinensis; type=EST; length=475bp
TTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAG
CGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAG
AGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCA
AGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATA
GTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCA
TGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAG
CTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAA
ATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTC
TGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTG
GGCTCATCAAAACAACAACTGGAAA
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