CF504264

Overview
NameCF504264
Unique NameCF504264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVL 338
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A + L
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFAVKAL 94          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPG 113          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVG 452
            R+ V+++RRREG+TDY  R RLI   +N       R VVR TN+ II Q+++A + GD  L    + EL  +G +  L N  AAY TG+L A R  K       YEG +   G   +   A      +  +D G
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGIADIGLQVASTGARVFAAIKGAVDAG 127          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   54 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVL 338
            ++V ++RRREGKTDY AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G +N +A Y TG L A+R L
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL 94          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12
Identity = 55/143 (38.46%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   39 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRAL---LDVGL 455
            A+   ++VKY+RRREGKT+Y  R   +  +         R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L N  AAY TG LL  R LK         G  EA  +     P    R F A+   +D GL
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGL 129          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   39 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            A+  +++V ++RRREGKT++R R++L+        TP  R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKG 113          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 341
            R++V  +RRREGKT+Y  R +++            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.262e-12
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIK 461
            R++V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD ++AAA+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V      RP +  L    IK
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.269e-12
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 341
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ 97          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.240e-11
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   51 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTG 473
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYG 113          
The following BLAST results are available for this feature:
BLAST of CF504264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL18_METMJ1.730e-1345.8350S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METB61.730e-1336.1750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_METLZ5.034e-1336.5750S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_METS36.575e-1341.0550S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_SULTO1.121e-1238.4650S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_META31.121e-1234.4850S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_STAMF1.913e-1247.9650S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_DESK14.262e-1236.2350S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_ARCFU7.269e-1241.2450S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METPE1.240e-1136.8850S ribosomal protein L18P OS=Methanosphaerula pal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-753 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504264 ID=CF504264; Name=CF504264; organism=Citrus sinensis; type=EST; length=475bp
TTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAG
CGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAG
AGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCA
AGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATA
GTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCA
TGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAG
CTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAA
ATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTC
TGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTG
GGCTCATCAAAACAACAACTGGAAA
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