CF504267

Overview
NameCF504267
Unique NameCF504267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_BOVIN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.539e-53
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 3.429e-53
Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 4.479e-53
Identity = 94/148 (63.51%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP + +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  159 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCVFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 306          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 9.977e-53
Identity = 97/148 (65.54%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ PLG G+A A KY + + V   LYGDGAANQGQLFEA N+A LWDLP + VCENN +GMGT   R++ S  YY RGDYVPG+ VDGMD LAV++A K+AKE+     GP+++EM TYRYHGHSMSDPG++YRTR+EI
Sbjct:  154 FYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEI 301          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.702e-52
Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQIPLG G+ FAQKY +  T TFALYGDGA+NQGQ FEA N+A LW LP I  CENN YGMGT+  R++    +YKRG Y+PGL V+GMD LAV QA KFAK++ ++N  P+++E  TYRY GHSMSDPG+TYR+R+E+
Sbjct:  177 FYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEV 324          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.702e-52
Identity = 95/148 (64.19%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ PLG G+AFA KY K++ V   ++GDGA NQGQLFE++N+A LWDLP + VCENN YGMGTA  R++ S  YY RGDYVPG+ VDGMD LAV+QA ++AKE      GP+++EM TYRY GHSMSDPG++YRTR+E+
Sbjct:  156 FYGGNGIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQLFESMNMAKLWDLPVLYVCENNGYGMGTAAARSSASTDYYTRGDYVPGIWVDGMDVLAVRQAVRWAKEWCNAGKGPLMIEMATYRYSGHSMSDPGTSYRTREEV 303          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.702e-52
Identity = 94/148 (63.51%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ PLG G+A A KY  ++ +   LYGDGAANQGQ+ EA N+AALW LP + +CENN YGMGT+  RAA SP YYKRG+++PGLKVDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  158 FYGGNGIVGAQGPLGAGIALACKYKGNDEICLTLYGDGAANQGQIAEAFNMAALWKLPCVFICENNLYGMGTSTERAAASPDYYKRGNFIPGLKVDGMDVLCVREATKFAANYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 305          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PONAB (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.223e-52
Identity = 94/148 (63.51%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+F A N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFGAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PANTR (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.223e-52
Identity = 94/148 (63.51%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ TYRYHGHSMS PG +YRTR+EI
Sbjct:  160 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSGPGVSYRTREEI 307          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_MACFA (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.103e-51
Identity = 93/148 (62.84%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FY G+GIVGAQ+PLG G+A A KY+  + V   LYGDGAA+QGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A +FA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  160 FYRGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAADQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
The following BLAST results are available for this feature:
BLAST of CF504267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_BOVIN1.539e-5364.86Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_HUMAN3.429e-5364.19Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PIG4.479e-5363.51Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_CAEEL9.977e-5365.54Probable pyruvate dehydrogenase E1 component subun... [more]
ODPA_SCHPO1.702e-5264.19Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_ASCSU1.702e-5264.19Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPAT_HUMAN1.702e-5263.51Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PONAB2.223e-5263.51Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PANTR2.223e-5263.51Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MACFA1.103e-5162.84Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-756 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504267 ID=CF504267; Name=CF504267; organism=Citrus sinensis; type=EST; length=456bp
AAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAGATTCC
TTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGG
TGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTC
GAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTG
CGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGA
GTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGAT
GGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCA
TGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATC
ATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAG
ATCAGT
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