CF504267

Overview
NameCF504267
Unique NameCF504267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.882e-51
Identity = 91/148 (61.49%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+A A KY K+  +  ALYGDGAANQGQ+FEA N++ALW LP + +CENN YGMGTA  R+A S  Y+K+G  +PGL+V+GMD L+V++A KFA +H     GP+++E+ TYRYHGHSMSDPG +YRTR+E+
Sbjct:  161 FYGGNGIVGAQVPLGAGVALACKYLKNGQICLALYGDGAANQGQVFEAYNMSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKGFVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEV 308          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPAT_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Mus musculus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.457e-51
Identity = 91/148 (61.49%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ+PLG G+AFA KY K+  V  ALYGDGAANQGQ+FEA N++ALW LP + +CENN YGMGT+  R+A S  Y+K+G  +PGL+V+GMD L V++A KFA +H     GP+++E+ TYRYHGHSMSDPG +YR+R+E+
Sbjct:  161 FYGGNGIVGAQVPLGAGVAFACKYLKNGQVCLALYGDGAANQGQVFEAYNMSALWKLPCVFICENNLYGMGTSNERSAASTDYHKKGFIIPGLRVNGMDILCVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRSREEV 308          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.338e-51
Identity = 93/148 (62.84%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGG+GIVGAQ PLG G+AFA KY K + V   L+GDGA NQGQL+E++N+A LW+LP + VCENN YGMGT+  R++ S  YY RGDYVPG  VDGMD LAV+QA ++ KE      GP+++EM TYRY GHSMSDPG++YRTR+EI
Sbjct:  151 FYGGNGIVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQLYESMNMAKLWELPVLYVCENNGYGMGTSAARSSASTDYYTRGDYVPGFWVDGMDVLAVRQAIRWGKEWCNAGKGPLMIEMATYRYGGHSMSDPGTSYRTREEI 298          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.067e-42
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 1
Query:    1 KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            K+  FYGGHGIVGAQ+ LG GLAFA +Y  ++ V+ A +GDGAANQGQ++E+ N+AALW LP I + ENN Y MGT+  RA+    + +RG    +PG +VDGMD  AVK A   A EH     GP+ILEM TYRY GHSMSDP + YR++DE+
Sbjct:  133 KEKHFYGGHGIVGAQVSLGTGLAFANRYRGNDNVSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDP-AKYRSKDEV 285          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.069e-38
Identity = 76/150 (50.67%), Postives = 103/150 (68.67%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGGHGIVGAQ+P+G GLAFA+KY+    + F   GDGA NQGQ++EA N+AALW LP + + ENN Y MGT+  R+      YK+G+   + G ++DGMD   +    K A E+  +N  P+ILE+ TYRY GHSMSDP + YR+++E+
Sbjct:  116 FYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDP-AKYRSKEEV 264          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.941e-38
Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            F+GG+GIVGAQ+PLG GLAFA KY  D   + A +GDG+ANQGQ++EA N+AALW LP I V ENN Y MGT+  RA    +  +RG    +P L VDGMD L V+ A   A +      GP+ILEM TYRY GHSMSDP + YR+R+E++
Sbjct:  141 FFGGNGIVGAQVPLGAGLAFAHKYRNDGGCSAAYFGDGSANQGQVYEAYNMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDP-ARYRSREEVN 290          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.184e-37
Identity = 76/153 (49.67%), Postives = 107/153 (69.93%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAL----AVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGGHGIVGAQ+P+G GLAFA+KY+    + F   GDGA NQGQ++EA N+AALW LP + + ENN Y MGT+  R+      YK+G+   + G +++GMD       VKQA ++ +E+++   P+ILE+ TYRY GHSMSDP + YR+++E+
Sbjct:  116 FYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSM---PLILEVKTYRYRGHSMSDP-AKYRSKEEV 264          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.445e-37
Identity = 75/150 (50.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGGHGIVGAQ+P+G GLAF +KY+    + F   GDGA NQGQ++EA N+AALW LP + + ENN Y MGT+  R+      YK+G    + G ++DGMD   +    K A E+  +N  P+ILE+ TYRY GHSMSDP + YR+++E+
Sbjct:  116 FYGGHGIVGAQVPIGTGLAFVEKYNDTHNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDP-AKYRSKEEV 264          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 74/151 (49.01%), Postives = 103/151 (68.21%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            FYGGHGIVGAQ+P+G GLAFA+KY+    + F   GDGA NQGQ++EA N+A+LW LP + + ENN Y MGT+  R+      YK+G+   + G ++DGMD   +    K   E+  +N  P+ILE+ TYRY GHSMSDP + YR+++E++
Sbjct:  116 FYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDP-AKYRSKEEVA 265          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            FYGGHGIVGAQ+P+G GLAFA+KY+    + F   GDGA NQGQ++EA N+A+LW LP + + ENN Y MGT+  R+      YK+G+   + G ++DGMD   +    K   E+  +N  P+ILE+ TYRY GHSMSDP + YR+++E+
Sbjct:  116 FYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQVYEAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDP-AKYRSKEEV 264          
The following BLAST results are available for this feature:
BLAST of CF504267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPAT_RAT1.882e-5161.49Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_MOUSE2.457e-5161.49Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPT_ASCSU9.338e-5162.84Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME6.067e-4255.84Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE4.069e-3850.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ZYMMO6.941e-3854.97Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR1.184e-3749.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN3.445e-3750.00Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICTY4.499e-3749.01Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR1.002e-3649.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-756 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504267 ID=CF504267; Name=CF504267; organism=Citrus sinensis; type=EST; length=456bp
AAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAGATTCC
TTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGG
TGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTC
GAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTG
CGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGA
GTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGAT
GGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCA
TGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATC
ATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAG
ATCAGT
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