CF504267

Overview
NameCF504267
Unique NameCF504267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.451e-27
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 450
            F GG   +   IP+  G AF   Y       ++D  VT   +GDG  N GQ FE LN+A LW LP I V ENN + +G A  R++  P  +K+ +   +PG++VDGMD LAV+QA K A + A + +GP ++E  TYR+ GHS++DP    R+R E
Sbjct:  127 FLGGFAFIAEGIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPTLIEALTYRFRGHSLADP-DELRSRQE 281          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.604e-26
Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    4 DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 450
            D G  G +GIVG    L CG A   KY + + V+   +GDGA NQG   E LN+AA+W+LP + V ENN YG  T    A+   S   R     +PG+ VDG D LAV QA + A E A    GP ++E  TYR +GH   D   TY+T+DE
Sbjct:  114 DKGMLGANGIVGGGFTLACGSALTAKYKQTKNVSVCFFGDGANNQGTFHEGLNLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDILAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGD-AQTYKTKDE 264          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 64/156 (41.03%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   13 FYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 450
            F GG   +   IP+  G AF   Y +       +  VT   +GDG  N GQ FE LN+A LW LP I V ENN + +G A  R++  P  +K+ +   +PG++VDGMD LAV+Q  + A E A +  GP ++E  TYR+ GHS++DP    R+R E
Sbjct:  125 FLGGFAFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADP-DELRSRQE 279          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ACOA_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoA PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 3.130e-22
Identity = 62/151 (41.06%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   10 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            G  G +GI+GA  PL CG A A K+     V     GDGA+NQG   E+LN+AA+W+LP I V ENN Y   T+        SY  R  G  +PG+ VDG D  AV +A       A +  GP +LE    R++GH   D   TYR   E+
Sbjct:  119 GMMGANGILGAGAPLICGAALAAKFRGKGEVGITFCGDGASNQGTFLESLNLAAVWNLPVIFVIENNGYAESTSRDYGTAVDSYVDRAAGFGIPGVTVDGTDFFAVHEAAGEVIRRAREGGGPSLLECKMVRFYGHFEGD-AQTYRAAGEL 268          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AFA K      V     GDG ++QG  +E +N AA +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA K A++ A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQTAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDE 288          
The following BLAST results are available for this feature:
BLAST of CF504267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_PORYE1.451e-2742.31Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_BACSU1.604e-2644.08Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPA_PORPU3.573e-2641.03Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_RALEH3.130e-2241.06Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPA_STAAW5.340e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS5.340e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAN5.340e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAM5.340e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAC5.340e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAR9.108e-2241.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-756 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504267 ID=CF504267; Name=CF504267; organism=Citrus sinensis; type=EST; length=456bp
AAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAGATTCC
TTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGG
TGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTC
GAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTG
CGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGA
GTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGAT
GGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCA
TGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATC
ATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAG
ATCAGT
back to top