CF504308

Overview
NameCF504308
Unique NameCF504308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.773e-27
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTE--ALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A+MGV+ G  G +++TD D IEKSNL+RQFLFR  ++G+ KS        ++NP L  +  + Q R  PE+E +F D F+E              R+Y+D+RC++F+KPLLESGTLG
Sbjct:  437 AIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLG 563          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.540e-27
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN A+MG+  G +G + +TD D IEKSNL+RQFLFR  +I Q KS        ++NP LN +A  +R  P+TE+ +N+ F+               RLY+D +C+Y+ KPLLESGTLG
Sbjct:  438 AIGCEMLKNFAMMGLGAGPKGLVHVTDMDTIEKSNLNRQFLFRSSDIQQLKSQTAANAVRVMNPDLNVKAYSLRVGPDTESHYNEEFFNSLDGVCNALDNVEARLYMDSQCVYYGKPLLESGTLG 562          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.278e-22
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQ-GKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN AL+GV  G + G +T+TD D+IEKSNL+RQFLFR  +I + KS         INP L  +A   +  P TE++++D F+               R Y+D RCL   +PLL+SGT+G
Sbjct:  470 AIGCEMLKNFALLGVGTGREKGMVTVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAAEATLKINPQLKIDAHLNKVCPATESIYSDEFYTKQDIIITALDNVEARRYVDSRCLANLRPLLDSGTMG 595          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.246e-21
Identity = 52/125 (41.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LK  AL+G+  GN G LT+ D D IE+SNLSRQFLFR  ++G+ K+ V       +NP L    L    +P TE+++ D F+               R Y+  RC ++ KPLLE+GT G
Sbjct:  442 AIGCELLKVFALVGLGAGNSGGLTVVDMDHIERSNLSRQFLFRSQDVGRPKAEVAAAAARGLNPDLQVIPLTYPLDPTTEHIYGDNFFSRVDGVAAALDSFQARRYVAARCTHYLKPLLEAGTSG 566          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.182e-21
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    3 ALGCEFLKNLALMGVSCGNQ-GKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            A+GCE LKN AL+GV    + G +T+TD D+IEKSNL+RQFLFR  +I + KS         IN  +  +A   +  P TE ++ND F+               R Y+D RCL   +PLL+SGT+G
Sbjct:  470 AIGCEMLKNFALLGVGTSKEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAADATLKINSQIKIDAHLNKVCPTTETIYNDEFYTKQDVIITALDNVEARRYVDSRCLANLRPLLDSGTMG 595          
BLAST of CF504308 vs. ExPASy Swiss-Prot
Match: UBA2_SCHPO (Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe GN=uba2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 3
Query:    6 LGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLYIDQRCLYFQKPLLESGTLG 377
            +GCE LKNL + GV      ++ I D D I+ SNL+RQFLFR  ++ Q K+ V        NP++  EA         E+ FN  ++               R +++++CL    PL+ESGT G
Sbjct:   36 IGCELLKNLLMSGVK-----EVHIIDLDTIDLSNLNRQFLFRKKHVKQPKAIVAAKTASSFNPNVKLEAYHANIK---EDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLLASVPLIESGTTG 151          
The following BLAST results are available for this feature:
BLAST of CF504308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_SCHPO5.773e-2746.46Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1_DICDI7.540e-2746.40Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA6_MOUSE3.278e-2243.65Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN1.246e-2141.60Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_HUMAN6.182e-2142.06Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA2_SCHPO3.400e-1133.87Ubiquitin-activating enzyme E1-like OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-797 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504308 ID=CF504308; Name=CF504308; organism=Citrus sinensis; type=EST; length=380bp
GTGCTCTGGGGTGTGAGTTCTTAAAAAATCTAGCATTAATGGGGGTTTCT
TGTGGTAACCAAGGGAAGTTGACAATTACAGATGATGATGTCATTGAGAA
GAGCAACCTTAGCAGGCAATTTCTGTTCCGGGATTGGAACATTGGGCAGG
CTAAATCCACAGTTGCTGCTTCTGCAGCTGCTTTGATAAATCCTCATCTA
AATACTGAAGCCTTGCAGATCCGTGCAAACCCAGAGACTGAGAATGTGTT
TAATGATACATTCTGGGAGAATCTGAACGTTGTTGTCAATGCTCTGGATA
ATGTCAATGCCAGGCTTTACATTGACCAGAGGTGCTTATATTTCCAAAAG
CCACTTTTGGAGTCAGGAACTCTAGGTGCC
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