CF504318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.242e-23 Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT M+LGD C+RGC FC+V T NVAEA+A GLDYVV+TSVDRDDL D G+GHFA+T+R++K ++L+EAL+PDF+G Sbjct: 58 ATFMLLGDRCSRGCNFCDVATG-GMDPLDPDEPANVAEAVAEIGLDYVVLTSVDRDDLDDGGAGHFAETIREIKRRDTSVLVEALIPDFQG 147
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SULAC (Probable lipoyl synthase OS=Sulfolobus acidocaldarius GN=lipA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.995e-23 Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT MI+GD CTRGCRFC VK + VAEA+ GLDYVVITSVDRDDLAD G+ HF+Q V+ +KE+ P++++E L PDF G Sbjct: 46 ATFMIMGDICTRGCRFCYVKKGKPVLLDHEEPI-KVAEAVREMGLDYVVITSVDRDDLADGGASHFSQVVKAVKEMNPDVIVEVLTPDFMG 135
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HALLT (Probable lipoyl synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lipA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.523e-23 Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT M++GD C+RGC FC+V+T NVA+A+A GLDYVV+TSVDRDDLAD GS HFA+T+R+++ P +L+E L+PDF+G Sbjct: 58 ATFMLMGDRCSRGCNFCDVETG-GMKSLDSDEPENVADAVAEIGLDYVVLTSVDRDDLADGGSEHFAETIREIQRRDPEILVETLIPDFQG 147
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_THET8 (Lipoyl synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipA PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22 Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 T+MILGD CTR C+FC V T VAEAIA G+ YVV+TSVDRDDL D G+ HFA T+R +KE P +L+EAL PDF+G Sbjct: 87 TVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQG 176
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_THET2 (Lipoyl synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lipA PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22 Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 T+MILGD CTR C+FC V T VAEAIA G+ YVV+TSVDRDDL D G+ HFA T+R +KE P +L+EAL PDF+G Sbjct: 87 TVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQG 176
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_AERPE (Probable lipoyl synthase OS=Aeropyrum pernix GN=lipA PE=3 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22 Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT MI+GDTCTRGCRFC VK VA A+ + GLDYV +TSVDRDDL D G+ HFA TVR +K L+P+ ++EAL+PDF+G Sbjct: 49 ATFMIMGDTCTRGCRFCYVKKG-VPEPLDPLEPYKVALAVDALGLDYVTLTSVDRDDLPDGGASHFAATVRAIKRLRPDTIVEALIPDFQG 138
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NOVAD (Lipoyl synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=lipA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22 Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 270 AT+MILGD CTR C FCNVKT NVA A A GL+++VITSVDRDDL D G+GHF + ++ L+EL PN IE L PDFR Sbjct: 62 ATVMILGDVCTRACAFCNVKTGMPRAVDPMEPI-NVATAAAKMGLEHIVITSVDRDDLPDGGAGHFVKVIKALRELTPNTTIEILTPDFR 150
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA1_BRAJA (Lipoyl synthase 1 OS=Bradyrhizobium japonicum GN=lipA1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.098e-21 Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267 AT MI+GDTCTR C FCNVKT NVAEA+A GL +VVITSVDRDDLAD G+ HFAQT+R ++ P+ IE L PDF Sbjct: 77 ATFMIMGDTCTRACAFCNVKTG-LPNALDADEPQNVAEAVAKLGLAHVVITSVDRDDLADGGAEHFAQTIRAIRAACPSTTIEILTPDF 164
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACTN (Lipoyl synthase OS=Bacteroides thetaiotaomicron GN=lipA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21 Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT MI GD CTR C+FCN +T R T+VAE+IA LD+ V+TSVDRDDL D G+GH+A T+R++K L P IE L+PDF+G Sbjct: 54 ATFMIGGDICTRSCKFCNTQTGRPHPLDANEP-THVAESIALMKLDHAVVTSVDRDDLPDLGAGHWAHTIREIKRLNPQTTIEVLIPDFQG 143
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_JANMA (Lipoyl synthase OS=Janthinobacterium sp. (strain Marseille) GN=lipA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.579e-21 Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273 AT MI+GD CTR C FC+V R N+A+ IA+ L+YVVITSVDRDDL D G+GHFA+ +R+++EL PN IE LVPDFRG Sbjct: 88 ATFMIMGDKCTRRCPFCDVGHGRPDPLDVNEPE-NLAKTIAALRLNYVVITSVDRDDLRDGGAGHFAECIRRVRELSPNTRIEILVPDFRG 177 The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bpback to top |