CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.242e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M+LGD C+RGC FC+V T             NVAEA+A  GLDYVV+TSVDRDDL D G+GHFA+T+R++K    ++L+EAL+PDF+G
Sbjct:   58 ATFMLLGDRCSRGCNFCDVATG-GMDPLDPDEPANVAEAVAEIGLDYVVLTSVDRDDLDDGGAGHFAETIREIKRRDTSVLVEALIPDFQG 147          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SULAC (Probable lipoyl synthase OS=Sulfolobus acidocaldarius GN=lipA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.995e-23
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTRGCRFC VK  +            VAEA+   GLDYVVITSVDRDDLAD G+ HF+Q V+ +KE+ P++++E L PDF G
Sbjct:   46 ATFMIMGDICTRGCRFCYVKKGKPVLLDHEEPI-KVAEAVREMGLDYVVITSVDRDDLADGGASHFSQVVKAVKEMNPDVIVEVLTPDFMG 135          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HALLT (Probable lipoyl synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lipA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.523e-23
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M++GD C+RGC FC+V+T             NVA+A+A  GLDYVV+TSVDRDDLAD GS HFA+T+R+++   P +L+E L+PDF+G
Sbjct:   58 ATFMLMGDRCSRGCNFCDVETG-GMKSLDSDEPENVADAVAEIGLDYVVLTSVDRDDLADGGSEHFAETIREIQRRDPEILVETLIPDFQG 147          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_THET8 (Lipoyl synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+TSVDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G
Sbjct:   87 TVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQG 176          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_THET2 (Lipoyl synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lipA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+TSVDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G
Sbjct:   87 TVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQG 176          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_AERPE (Probable lipoyl synthase OS=Aeropyrum pernix GN=lipA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.898e-22
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GDTCTRGCRFC VK               VA A+ + GLDYV +TSVDRDDL D G+ HFA TVR +K L+P+ ++EAL+PDF+G
Sbjct:   49 ATFMIMGDTCTRGCRFCYVKKG-VPEPLDPLEPYKVALAVDALGLDYVTLTSVDRDDLPDGGASHFAATVRAIKRLRPDTIVEALIPDFQG 138          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NOVAD (Lipoyl synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=lipA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 270
            AT+MILGD CTR C FCNVKT             NVA A A  GL+++VITSVDRDDL D G+GHF + ++ L+EL PN  IE L PDFR
Sbjct:   62 ATVMILGDVCTRACAFCNVKTGMPRAVDPMEPI-NVATAAAKMGLEHIVITSVDRDDLPDGGAGHFVKVIKALRELTPNTTIEILTPDFR 150          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA1_BRAJA (Lipoyl synthase 1 OS=Bradyrhizobium japonicum GN=lipA1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.098e-21
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT             NVAEA+A  GL +VVITSVDRDDLAD G+ HFAQT+R ++   P+  IE L PDF
Sbjct:   77 ATFMIMGDTCTRACAFCNVKTG-LPNALDADEPQNVAEAVAKLGLAHVVITSVDRDDLADGGAEHFAQTIRAIRAACPSTTIEILTPDF 164          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACTN (Lipoyl synthase OS=Bacteroides thetaiotaomicron GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI GD CTR C+FCN +T R          T+VAE+IA   LD+ V+TSVDRDDL D G+GH+A T+R++K L P   IE L+PDF+G
Sbjct:   54 ATFMIGGDICTRSCKFCNTQTGRPHPLDANEP-THVAESIALMKLDHAVVTSVDRDDLPDLGAGHWAHTIREIKRLNPQTTIEVLIPDFQG 143          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_JANMA (Lipoyl synthase OS=Janthinobacterium sp. (strain Marseille) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.579e-21
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+ IA+  L+YVVITSVDRDDL D G+GHFA+ +R+++EL PN  IE LVPDFRG
Sbjct:   88 ATFMIMGDKCTRRCPFCDVGHGRPDPLDVNEPE-NLAKTIAALRLNYVVITSVDRDDLRDGGAGHFAECIRRVRELSPNTRIEILVPDFRG 177          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_NATPD2.242e-2356.04Probable lipoyl synthase OS=Natronomonas pharaonis... [more]
LIPA_SULAC4.995e-2356.04Probable lipoyl synthase OS=Sulfolobus acidocaldar... [more]
LIPA_HALLT6.523e-2353.85Probable lipoyl synthase OS=Halorubrum lacusprofun... [more]
LIPA_THET81.898e-2255.56Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_THET21.898e-2255.56Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_AERPE1.898e-2256.04Probable lipoyl synthase OS=Aeropyrum pernix GN=li... [more]
LIPA_NOVAD4.228e-2256.67Lipoyl synthase OS=Novosphingobium aromaticivorans... [more]
LIPA1_BRAJA2.098e-2158.43Lipoyl synthase 1 OS=Bradyrhizobium japonicum GN=l... [more]
LIPA_BACTN2.741e-2153.85Lipoyl synthase OS=Bacteroides thetaiotaomicron GN... [more]
LIPA_JANMA3.579e-2156.04Lipoyl synthase OS=Janthinobacterium sp. (strain M... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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