CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HERAR (Lipoyl synthase OS=Herminiimonas arsenicoxydans GN=lipA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.579e-21
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+ IA+  L+YVVITSVDRDDL D G+GHFA+ +R+++EL PN  IE LVPDFRG
Sbjct:   92 ATFMIMGDKCTRRCPFCDVGHGRPDPLDVNEPE-NLAKTIAALRLNYVVITSVDRDDLRDGGAGHFAECIRRVRELSPNTRIEILVPDFRG 181          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATW (Lipoyl synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATT (Lipoyl synthase OS=Francisella tularensis subsp. tularensis GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATO (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATN (Lipoyl synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATM (Lipoyl synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATH (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRATF (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRAT1 (Lipoyl synthase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.974e-21
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ANAPZ (Lipoyl synthase OS=Anaplasma phagocytophilum (strain HZ) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++GD CTR C FCNVKT              V EAI+  GL +VVITSVDRDDL D G+ HFA+ +R++++  PN+ IE L PDF+G
Sbjct:   51 ATIMVMGDVCTRACAFCNVKTG-VPRALDLGEPERVGEAISKLGLKHVVITSVDRDDLPDGGASHFAKCIREIRKRDPNVTIEILTPDFQG 140          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_HERAR3.579e-2156.04Lipoyl synthase OS=Herminiimonas arsenicoxydans GN... [more]
LIPA_FRATW7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_FRATT7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_FRATO7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. h... [more]
LIPA_FRATN7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. n... [more]
LIPA_FRATM7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. m... [more]
LIPA_FRATH7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. h... [more]
LIPA_FRATF7.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. h... [more]
LIPA_FRAT17.974e-2149.45Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_ANAPZ1.041e-2052.75Lipoyl synthase OS=Anaplasma phagocytophilum (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
back to top