CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_FRAP2 (Lipoyl synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=lipA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.169e-20
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR C+FC+V T             N AE++    L+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G
Sbjct:   89 ATIMLMGAVCTRACKFCSVDTGNPKGWLDKEEPQNTAESVKLMNLEYVVLTSVDRDDLVDGGAGHYAATITAIKNLDENIKVEALTPDFAG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_POLNA (Lipoyl synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=lipA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.751e-20
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A  IA+  L YVVITSVDRDDL D GSGHF + +++++EL P   IE LVPDFRG
Sbjct:   91 ATFMIMGDKCTRRCPFCDVGHGRPDPLDADEPL-NLARTIAALKLKYVVITSVDRDDLRDGGSGHFVECIQRIRELSPGTTIEVLVPDFRG 180          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SORC5 (Lipoyl synthase OS=Sorangium cellulosum (strain So ce56) GN=lipA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.817e-20
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT+M+LGD CTRGCRFC V T             +VA AIA   L YVV+T V+RDDL D G+ H A+TV +L  L+P++LIE LV DF+G
Sbjct:   54 ATVMLLGDVCTRGCRFCAVTTGDPRGAVDVREPEHVARAIARLSLQYVVMTMVNRDDLLDGGAEHVARTVSRLHALRPDLLIETLVGDFQG 144          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACFR (Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.817e-20
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI GD CTR C+FCN +T R           +VAE+IA   L + VITSVDRDDL D G+ H+AQT+R++K L P    E L+PDF+G
Sbjct:   56 ATFMIAGDICTRSCKFCNTQTGRPLPLDPDEP-AHVAESIALMKLSHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQG 145          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOP2 (Lipoyl synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=lipA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.151e-19
Identity = 49/89 (55.06%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VAEA    GL+++VITSVDRDDLAD G+ HFA T+R ++E  P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTGMPGALDPNEP-AYVAEATRKLGLEHLVITSVDRDDLADGGAAHFAATIRAVREACPTTTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_METSB (Lipoyl synthase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=lipA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.151e-19
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VA+A+A  GL +VVITSVDRDDL+D G+ HFA+ +  ++ L P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTG-LPRALDRNEPQRVADAVAKLGLSHVVITSVDRDDLSDGGARHFAEVIAAIRSLSPKTTIEVLTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_AZOC5 (Lipoyl synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lipA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.151e-19
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNV+T              V EA+A  GL +VVITSVDRDDL D G+ HFA+T+  +++L P   IE L PDF
Sbjct:   74 ATFMIMGDTCTRACSFCNVRTGMPKALDLDEPQ-KVGEAVAKLGLSHVVITSVDRDDLTDGGAEHFARTIASIRKLSPGTTIEILTPDF 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICBR (Lipoyl synthase OS=Rickettsia bellii (strain RML369-C) GN=lipA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.504e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:  103 ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDF 190          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICB8 (Lipoyl synthase OS=Rickettsia bellii (strain OSU 85-389) GN=lipA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.504e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:   51 ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDF 138          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HALHL (Lipoyl synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=lipA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.504e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M+LG  CTR CRFC+V T             + AE++   GL YVV+TSVDRDDL D G+ H+AQ VR +K   P+  +EAL PDFRG
Sbjct:   88 ATFMVLGSVCTRTCRFCSVDTGNPKGRLDPQEPEHCAESVRLMGLRYVVLTSVDRDDLPDGGAEHYAQCVRAIKADNPDTAVEALTPDFRG 178          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_FRAP25.169e-2048.35Lipoyl synthase OS=Francisella philomiragia subsp.... [more]
LIPA_POLNA6.751e-2053.85Lipoyl synthase OS=Polaromonas naphthalenivorans (... [more]
LIPA_SORC58.817e-2052.75Lipoyl synthase OS=Sorangium cellulosum (strain So... [more]
LIPA_BACFR8.817e-2051.65Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE... [more]
LIPA_RHOP21.151e-1955.06Lipoyl synthase OS=Rhodopseudomonas palustris (str... [more]
LIPA_METSB1.151e-1952.81Lipoyl synthase OS=Methylocella silvestris (strain... [more]
LIPA_AZOC51.151e-1952.81Lipoyl synthase OS=Azorhizobium caulinodans (strai... [more]
LIPA_RICBR1.504e-1952.81Lipoyl synthase OS=Rickettsia bellii (strain RML36... [more]
LIPA_RICB81.504e-1952.81Lipoyl synthase OS=Rickettsia bellii (strain OSU 8... [more]
LIPA_HALHL1.504e-1950.55Lipoyl synthase OS=Halorhodospira halophila (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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