CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEPBJ (Lipoyl synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=lipA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.457e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 270
            AT M+ GD CTR C +C+V + +            VAE+  + GL +VVIT+V+RDDL D G+ HFA+TV  ++E  P+  IE LVPDF+
Sbjct:   71 ATYMLGGDICTRRCSYCDVASGKPSALDRDEPK-RVAESAIALGLKHVVITAVNRDDLEDGGAAHFAETVEVVREGLPDCKIELLVPDFK 159          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_KOCRD (Lipoyl synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GDTCTR C FC++ T +            VAE++   GL Y  +TSV RDDLAD G+   A+T+R +  + P+  +E L+PDF+G
Sbjct:   72 ATFLIGGDTCTRRCDFCDIATGKPGMVDVAEPR-KVAESVRDLGLRYATVTSVARDDLADGGAWLNAETIRAIHAMNPSTGVEILIPDFKG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_GEOBB (Lipoyl synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +ILG  CTR C FC+V +             +VAEA+   GL +VVITS  RDDL D G+  +A+TV +++ + P   +E L+PDFRG
Sbjct:   52 ATFLILGRICTRLCSFCSV-SKETPLPLEPGEAASVAEAVKRLGLSHVVITSPTRDDLPDGGASVYAETVARIRSVSPATKVELLIPDFRG 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_CORJK (Lipoyl synthase OS=Corynebacterium jeikeium (strain K411) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT +I GDTC+R C FC +K+ R            VAE +   GL Y  IT V RDDL D+G+  +A+ V+K+ EL PN  +E L PDF
Sbjct:   72 ATFLIGGDTCSRRCDFCQIKSGRPSPLDMDEPR-RVAENVREMGLRYATITGVTRDDLDDEGAWLYAEVVKKIHELNPNTGVENLTPDF 159          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_CORA7 (Lipoyl synthase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GD CTR C FC++ T +            VAE I    L+Y  IT V RDDL D+G+  +A+ VRK+ EL PN  +E L PDF G
Sbjct:   72 ATFLIGGDKCTRRCDFCDIATGKPAELDRDEPR-RVAENIQEMDLNYTTITGVTRDDLPDEGAWLYAEVVRKIHELNPNTGVENLTPDFSG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ACIC1 (Lipoyl synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GDTC+R C FC + + R            VAE++A  GL Y  +T V RDDL D+G+  +AQTVR++    P   +E L PDF G
Sbjct:   73 ATFLIGGDTCSRNCSFCQISSGRPQPLDRDEPR-RVAESVARMGLRYATVTGVTRDDLDDEGAWLYAQTVREIHHAVPGCGVELLTPDFHG 162          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_STACT (Lipoyl synthase OS=Staphylococcus carnosus (strain TM300) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.485e-14
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR CRFC VKT              VAE++    L +VVIT+V RDDL D GS  +A+TVRK++E  P   IE L  D  G
Sbjct:   59 ATFMILGAVCTRACRFCAVKTG-LPNELDLGEPERVAESVELMNLKHVVITAVARDDLRDAGSNVYAETVRKVRERNPYTTIEILPSDMGG 148          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_MYCTU (Lipoyl synthase OS=Mycobacterium tuberculosis GN=lipA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.485e-14
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GD CTR C FC + T +            VA+++ + GL Y  +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G
Sbjct:   72 ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPR-RVADSVRTMGLRYATVTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_MYCTA (Lipoyl synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.485e-14
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GD CTR C FC + T +            VA+++ + GL Y  +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G
Sbjct:   72 ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPR-RVADSVRTMGLRYATVTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_MYCBT (Lipoyl synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=lipA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.485e-14
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I GD CTR C FC + T +            VA+++ + GL Y  +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G
Sbjct:   72 ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPR-RVADSVRTMGLRYATVTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNG 161          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_LEPBJ1.457e-1445.56Lipoyl synthase OS=Leptospira borgpetersenii serov... [more]
LIPA_KOCRD1.902e-1442.86Lipoyl synthase OS=Kocuria rhizophila (strain ATCC... [more]
LIPA_GEOBB1.902e-1443.96Lipoyl synthase OS=Geobacter bemidjiensis (strain ... [more]
LIPA_CORJK1.902e-1444.94Lipoyl synthase OS=Corynebacterium jeikeium (strai... [more]
LIPA_CORA71.902e-1445.05Lipoyl synthase OS=Corynebacterium aurimucosum (st... [more]
LIPA_ACIC11.902e-1442.86Lipoyl synthase OS=Acidothermus cellulolyticus (st... [more]
LIPA_STACT2.485e-1448.35Lipoyl synthase OS=Staphylococcus carnosus (strain... [more]
LIPA_MYCTU2.485e-1442.86Lipoyl synthase OS=Mycobacterium tuberculosis GN=l... [more]
LIPA_MYCTA2.485e-1442.86Lipoyl synthase OS=Mycobacterium tuberculosis (str... [more]
LIPA_MYCBT2.485e-1442.86Lipoyl synthase OS=Mycobacterium bovis (strain BCG... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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